Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0849

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0848 and Shewana3_0849 are separated by 177 nucleotidesShewana3_0849 and Shewana3_0850 overlap by 4 nucleotidesShewana3_0850 and Shewana3_0851 are separated by 153 nucleotides Shewana3_0848: Shewana3_0848 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase (RefSeq), at 985,378 to 986,229 _0848 Shewana3_0849: Shewana3_0849 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 986,407 to 987,837 _0849 Shewana3_0850: Shewana3_0850 - hypothetical protein (RefSeq), at 987,834 to 988,661 _0850 Shewana3_0851: Shewana3_0851 - TetR family transcriptional regulator (RefSeq), at 988,815 to 989,294 _0851 Position (kb) 986 987 988Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 986.400 kb on - strandat 986.450 kb on - strandat 986.531 kb on + strandat 986.550 kb on - strand, within Shewana3_0849at 986.550 kb on - strand, within Shewana3_0849at 986.617 kb on + strand, within Shewana3_0849at 986.717 kb on + strand, within Shewana3_0849at 986.717 kb on + strand, within Shewana3_0849at 986.725 kb on - strand, within Shewana3_0849at 986.725 kb on - strand, within Shewana3_0849at 986.785 kb on + strand, within Shewana3_0849at 986.829 kb on - strand, within Shewana3_0849at 986.840 kb on + strand, within Shewana3_0849at 986.840 kb on + strand, within Shewana3_0849at 986.848 kb on - strand, within Shewana3_0849at 986.969 kb on + strand, within Shewana3_0849at 987.026 kb on + strand, within Shewana3_0849at 987.086 kb on - strand, within Shewana3_0849at 987.096 kb on - strand, within Shewana3_0849at 987.096 kb on - strand, within Shewana3_0849at 987.112 kb on + strand, within Shewana3_0849at 987.112 kb on + strand, within Shewana3_0849at 987.118 kb on + strand, within Shewana3_0849at 987.119 kb on + strand, within Shewana3_0849at 987.136 kb on + strand, within Shewana3_0849at 987.172 kb on - strand, within Shewana3_0849at 987.172 kb on - strand, within Shewana3_0849at 987.283 kb on + strand, within Shewana3_0849at 987.338 kb on + strand, within Shewana3_0849at 987.346 kb on - strand, within Shewana3_0849at 987.409 kb on - strand, within Shewana3_0849at 987.472 kb on + strand, within Shewana3_0849at 987.510 kb on - strand, within Shewana3_0849at 987.774 kb on - strandat 987.859 kb on + strandat 988.012 kb on + strand, within Shewana3_0850at 988.019 kb on + strand, within Shewana3_0850at 988.027 kb on - strand, within Shewana3_0850at 988.768 kb on + strandat 988.786 kb on - strandat 988.832 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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986,400 - -3.5
986,450 - -2.3
986,531 + -4.2
986,550 - Shewana3_0849 0.10 -3.0
986,550 - Shewana3_0849 0.10 -3.3
986,617 + Shewana3_0849 0.15 -4.6
986,717 + Shewana3_0849 0.22 -1.5
986,717 + Shewana3_0849 0.22 -3.1
986,725 - Shewana3_0849 0.22 -1.8
986,725 - Shewana3_0849 0.22 -1.8
986,785 + Shewana3_0849 0.26 -4.8
986,829 - Shewana3_0849 0.29 -2.5
986,840 + Shewana3_0849 0.30 -4.3
986,840 + Shewana3_0849 0.30 -2.8
986,848 - Shewana3_0849 0.31 -2.2
986,969 + Shewana3_0849 0.39 -4.0
987,026 + Shewana3_0849 0.43 -2.3
987,086 - Shewana3_0849 0.47 -0.6
987,096 - Shewana3_0849 0.48 -1.8
987,096 - Shewana3_0849 0.48 +2.0
987,112 + Shewana3_0849 0.49 -3.6
987,112 + Shewana3_0849 0.49 -3.8
987,118 + Shewana3_0849 0.50 -3.1
987,119 + Shewana3_0849 0.50 -1.7
987,136 + Shewana3_0849 0.51 -4.2
987,172 - Shewana3_0849 0.53 -2.5
987,172 - Shewana3_0849 0.53 -0.0
987,283 + Shewana3_0849 0.61 -3.4
987,338 + Shewana3_0849 0.65 -3.4
987,346 - Shewana3_0849 0.66 -2.5
987,409 - Shewana3_0849 0.70 -2.4
987,472 + Shewana3_0849 0.74 -4.8
987,510 - Shewana3_0849 0.77 -1.7
987,774 - -2.3
987,859 + +0.8
988,012 + Shewana3_0850 0.21 +1.7
988,019 + Shewana3_0850 0.22 -0.0
988,027 - Shewana3_0850 0.23 -0.4
988,768 + -0.3
988,786 - -0.8
988,832 + +0.5

Or see this region's nucleotide sequence