Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0848 and Shewana3_0849 are separated by 177 nucleotides Shewana3_0849 and Shewana3_0850 overlap by 4 nucleotides Shewana3_0850 and Shewana3_0851 are separated by 153 nucleotides
Shewana3_0848: Shewana3_0848 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase (RefSeq), at 985,378 to 986,229
_0848
Shewana3_0849: Shewana3_0849 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 986,407 to 987,837
_0849
Shewana3_0850: Shewana3_0850 - hypothetical protein (RefSeq), at 987,834 to 988,661
_0850
Shewana3_0851: Shewana3_0851 - TetR family transcriptional regulator (RefSeq), at 988,815 to 989,294
_0851
Position (kb)
986
987
988 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 986.400 kb on - strand at 986.450 kb on - strand at 986.531 kb on + strand at 986.550 kb on - strand, within Shewana3_0849 at 986.550 kb on - strand, within Shewana3_0849 at 986.617 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.785 kb on + strand, within Shewana3_0849 at 986.829 kb on - strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.848 kb on - strand, within Shewana3_0849 at 986.969 kb on + strand, within Shewana3_0849 at 987.026 kb on + strand, within Shewana3_0849 at 987.086 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.118 kb on + strand, within Shewana3_0849 at 987.119 kb on + strand, within Shewana3_0849 at 987.136 kb on + strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849 at 987.283 kb on + strand, within Shewana3_0849 at 987.338 kb on + strand, within Shewana3_0849 at 987.346 kb on - strand, within Shewana3_0849 at 987.409 kb on - strand, within Shewana3_0849 at 987.472 kb on + strand, within Shewana3_0849 at 987.510 kb on - strand, within Shewana3_0849 at 987.774 kb on - strand at 987.859 kb on + strand at 988.012 kb on + strand, within Shewana3_0850 at 988.019 kb on + strand, within Shewana3_0850 at 988.027 kb on - strand, within Shewana3_0850 at 988.768 kb on + strand at 988.786 kb on - strand at 988.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 986,400 - -3.5 986,450 - -2.3 986,531 + -4.2 986,550 - Shewana3_0849 0.10 -3.0 986,550 - Shewana3_0849 0.10 -3.3 986,617 + Shewana3_0849 0.15 -4.6 986,717 + Shewana3_0849 0.22 -1.5 986,717 + Shewana3_0849 0.22 -3.1 986,725 - Shewana3_0849 0.22 -1.8 986,725 - Shewana3_0849 0.22 -1.8 986,785 + Shewana3_0849 0.26 -4.8 986,829 - Shewana3_0849 0.29 -2.5 986,840 + Shewana3_0849 0.30 -4.3 986,840 + Shewana3_0849 0.30 -2.8 986,848 - Shewana3_0849 0.31 -2.2 986,969 + Shewana3_0849 0.39 -4.0 987,026 + Shewana3_0849 0.43 -2.3 987,086 - Shewana3_0849 0.47 -0.6 987,096 - Shewana3_0849 0.48 -1.8 987,096 - Shewana3_0849 0.48 +2.0 987,112 + Shewana3_0849 0.49 -3.6 987,112 + Shewana3_0849 0.49 -3.8 987,118 + Shewana3_0849 0.50 -3.1 987,119 + Shewana3_0849 0.50 -1.7 987,136 + Shewana3_0849 0.51 -4.2 987,172 - Shewana3_0849 0.53 -2.5 987,172 - Shewana3_0849 0.53 -0.0 987,283 + Shewana3_0849 0.61 -3.4 987,338 + Shewana3_0849 0.65 -3.4 987,346 - Shewana3_0849 0.66 -2.5 987,409 - Shewana3_0849 0.70 -2.4 987,472 + Shewana3_0849 0.74 -4.8 987,510 - Shewana3_0849 0.77 -1.7 987,774 - -2.3 987,859 + +0.8 988,012 + Shewana3_0850 0.21 +1.7 988,019 + Shewana3_0850 0.22 -0.0 988,027 - Shewana3_0850 0.23 -0.4 988,768 + -0.3 988,786 - -0.8 988,832 + +0.5
Or see this region's nucleotide sequence