Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0846 and Shewana3_0847 are separated by 621 nucleotides Shewana3_0847 and Shewana3_0848 are separated by 170 nucleotides
Shewana3_0846: Shewana3_0846 - putative nitric oxide reductase (subunit B) transmembrane protein (RefSeq), at 980,576 to 982,861
_0846
Shewana3_0847: Shewana3_0847 - potassium/proton antiporter (RefSeq), at 983,483 to 985,207
_0847
Shewana3_0848: Shewana3_0848 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase (RefSeq), at 985,378 to 986,229
_0848
Position (kb) 983
984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 982.648 kb on - strand at 982.900 kb on - strand at 983.058 kb on - strand at 983.330 kb on + strand at 983.653 kb on + strand at 983.772 kb on + strand, within Shewana3_0847 at 983.862 kb on - strand, within Shewana3_0847 at 983.916 kb on + strand, within Shewana3_0847 at 983.916 kb on + strand, within Shewana3_0847 at 983.916 kb on + strand, within Shewana3_0847 at 983.924 kb on - strand, within Shewana3_0847 at 984.039 kb on + strand, within Shewana3_0847 at 984.089 kb on + strand, within Shewana3_0847 at 984.355 kb on + strand, within Shewana3_0847 at 984.395 kb on + strand, within Shewana3_0847 at 984.599 kb on + strand, within Shewana3_0847 at 984.644 kb on - strand, within Shewana3_0847 at 984.678 kb on - strand, within Shewana3_0847 at 984.909 kb on + strand, within Shewana3_0847 at 985.042 kb on - strand at 985.216 kb on + strand at 985.216 kb on + strand at 985.224 kb on - strand at 985.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 982,648 - -2.4 982,900 - -1.1 983,058 - +1.1 983,330 + -1.0 983,653 + +0.1 983,772 + Shewana3_0847 0.17 -0.4 983,862 - Shewana3_0847 0.22 -1.0 983,916 + Shewana3_0847 0.25 +0.3 983,916 + Shewana3_0847 0.25 +0.0 983,916 + Shewana3_0847 0.25 -0.3 983,924 - Shewana3_0847 0.26 -1.8 984,039 + Shewana3_0847 0.32 -1.0 984,089 + Shewana3_0847 0.35 -0.6 984,355 + Shewana3_0847 0.51 -0.5 984,395 + Shewana3_0847 0.53 +1.5 984,599 + Shewana3_0847 0.65 +0.4 984,644 - Shewana3_0847 0.67 -3.3 984,678 - Shewana3_0847 0.69 -0.8 984,909 + Shewana3_0847 0.83 -0.0 985,042 - +1.0 985,216 + +0.2 985,216 + +1.6 985,224 - -1.5 985,224 - +0.4
Or see this region's nucleotide sequence