Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0838
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
969,968 | + | Shewana3_0837 | 0.21 | -1.3 | |
970,026 | + | Shewana3_0837 | 0.27 | +0.3 | |
970,098 | - | Shewana3_0837 | 0.35 | +0.2 | |
970,231 | - | Shewana3_0837 | 0.49 | -1.2 | |
970,276 | + | Shewana3_0837 | 0.54 | -1.8 | |
970,386 | + | Shewana3_0837 | 0.65 | -0.7 | |
970,474 | + | Shewana3_0837 | 0.75 | -0.8 | |
970,535 | - | Shewana3_0837 | 0.81 | -0.1 | |
970,545 | + | Shewana3_0837 | 0.82 | -0.2 | |
970,622 | + | +0.3 | |||
970,659 | + | -0.6 | |||
970,730 | - | -0.0 | |||
970,761 | + | -0.1 | |||
970,761 | + | +1.0 | |||
970,769 | - | -0.4 | |||
971,309 | - | Shewana3_0838 | 0.83 | -1.7 | |
971,571 | - | Shewana3_0839 | 0.11 | -1.3 | |
971,617 | + | Shewana3_0839 | 0.15 | -0.4 | |
971,655 | + | Shewana3_0839 | 0.18 | -0.8 | |
971,663 | - | Shewana3_0839 | 0.19 | -0.5 | |
971,838 | + | Shewana3_0839 | 0.34 | -1.0 | |
971,846 | - | Shewana3_0839 | 0.34 | +1.5 | |
971,863 | + | Shewana3_0839 | 0.36 | -0.1 | |
971,971 | - | Shewana3_0839 | 0.45 | -0.3 | |
972,070 | + | Shewana3_0839 | 0.53 | -0.5 | |
972,070 | + | Shewana3_0839 | 0.53 | -1.1 | |
972,078 | - | Shewana3_0839 | 0.54 | -0.1 | |
972,078 | - | Shewana3_0839 | 0.54 | -1.7 | |
972,295 | + | Shewana3_0839 | 0.72 | -0.5 | |
972,318 | + | Shewana3_0839 | 0.74 | -1.2 |
Or see this region's nucleotide sequence