Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0837 and Shewana3_0838 are separated by 236 nucleotides Shewana3_0838 and Shewana3_0839 are separated by 49 nucleotides
Shewana3_0837: Shewana3_0837 - NAD-dependent epimerase/dehydratase (RefSeq), at 969,774 to 970,709
_0837
Shewana3_0838: Shewana3_0838 - MerR family transcriptional regulator (RefSeq), at 970,946 to 971,383
_0838
Shewana3_0839: Shewana3_0839 - AFG1 family ATPase (RefSeq), at 971,433 to 972,635
_0839
Position (kb)
970
971
972 Strain fitness (log2 ratio)
-2
-1
0
1 at 969.968 kb on + strand, within Shewana3_0837 at 970.026 kb on + strand, within Shewana3_0837 at 970.098 kb on - strand, within Shewana3_0837 at 970.231 kb on - strand, within Shewana3_0837 at 970.276 kb on + strand, within Shewana3_0837 at 970.386 kb on + strand, within Shewana3_0837 at 970.474 kb on + strand, within Shewana3_0837 at 970.535 kb on - strand, within Shewana3_0837 at 970.545 kb on + strand, within Shewana3_0837 at 970.622 kb on + strand at 970.659 kb on + strand at 970.730 kb on - strand at 970.761 kb on + strand at 970.761 kb on + strand at 970.769 kb on - strand at 971.309 kb on - strand, within Shewana3_0838 at 971.571 kb on - strand, within Shewana3_0839 at 971.617 kb on + strand, within Shewana3_0839 at 971.655 kb on + strand, within Shewana3_0839 at 971.663 kb on - strand, within Shewana3_0839 at 971.838 kb on + strand, within Shewana3_0839 at 971.846 kb on - strand, within Shewana3_0839 at 971.863 kb on + strand, within Shewana3_0839 at 971.971 kb on - strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.295 kb on + strand, within Shewana3_0839 at 972.318 kb on + strand, within Shewana3_0839
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 969,968 + Shewana3_0837 0.21 -1.3 970,026 + Shewana3_0837 0.27 +0.3 970,098 - Shewana3_0837 0.35 +0.2 970,231 - Shewana3_0837 0.49 -1.2 970,276 + Shewana3_0837 0.54 -1.8 970,386 + Shewana3_0837 0.65 -0.7 970,474 + Shewana3_0837 0.75 -0.8 970,535 - Shewana3_0837 0.81 -0.1 970,545 + Shewana3_0837 0.82 -0.2 970,622 + +0.3 970,659 + -0.6 970,730 - -0.0 970,761 + -0.1 970,761 + +1.0 970,769 - -0.4 971,309 - Shewana3_0838 0.83 -1.7 971,571 - Shewana3_0839 0.11 -1.3 971,617 + Shewana3_0839 0.15 -0.4 971,655 + Shewana3_0839 0.18 -0.8 971,663 - Shewana3_0839 0.19 -0.5 971,838 + Shewana3_0839 0.34 -1.0 971,846 - Shewana3_0839 0.34 +1.5 971,863 + Shewana3_0839 0.36 -0.1 971,971 - Shewana3_0839 0.45 -0.3 972,070 + Shewana3_0839 0.53 -0.5 972,070 + Shewana3_0839 0.53 -1.1 972,078 - Shewana3_0839 0.54 -0.1 972,078 - Shewana3_0839 0.54 -1.7 972,295 + Shewana3_0839 0.72 -0.5 972,318 + Shewana3_0839 0.74 -1.2
Or see this region's nucleotide sequence