Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0796

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0794 and Shewana3_0795 overlap by 4 nucleotidesShewana3_0795 and Shewana3_0796 are separated by 143 nucleotidesShewana3_0796 and Shewana3_0797 are separated by 62 nucleotides Shewana3_0794: Shewana3_0794 - ABC transporter related (RefSeq), at 914,563 to 915,501 _0794 Shewana3_0795: Shewana3_0795 - ABC-2 type transporter (RefSeq), at 915,498 to 916,268 _0795 Shewana3_0796: Shewana3_0796 - hypothetical protein (RefSeq), at 916,412 to 916,915 _0796 Shewana3_0797: Shewana3_0797 - protease domain-containing protein (RefSeq), at 916,978 to 921,159 _0797 Position (kb) 916 917Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 915.727 kb on - strand, within Shewana3_0795at 915.853 kb on - strand, within Shewana3_0795at 915.910 kb on + strand, within Shewana3_0795at 915.951 kb on - strand, within Shewana3_0795at 915.966 kb on - strand, within Shewana3_0795at 915.966 kb on - strand, within Shewana3_0795at 916.043 kb on - strand, within Shewana3_0795at 916.043 kb on - strand, within Shewana3_0795at 916.099 kb on + strand, within Shewana3_0795at 916.133 kb on + strand, within Shewana3_0795at 916.189 kb on + strand, within Shewana3_0795at 916.222 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.247 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.257 kb on - strandat 916.257 kb on - strandat 916.257 kb on - strandat 916.257 kb on - strandat 916.409 kb on + strandat 916.414 kb on + strandat 916.414 kb on + strandat 916.524 kb on - strand, within Shewana3_0796at 916.564 kb on + strand, within Shewana3_0796at 916.564 kb on + strand, within Shewana3_0796at 916.564 kb on + strand, within Shewana3_0796at 916.572 kb on - strand, within Shewana3_0796at 916.572 kb on - strand, within Shewana3_0796at 916.572 kb on - strand, within Shewana3_0796at 916.633 kb on + strand, within Shewana3_0796at 916.641 kb on - strand, within Shewana3_0796at 916.641 kb on - strand, within Shewana3_0796at 916.641 kb on - strandat 916.641 kb on - strand, within Shewana3_0796at 916.853 kb on + strand, within Shewana3_0796at 916.885 kb on - strandat 917.022 kb on - strandat 917.028 kb on + strandat 917.058 kb on + strandat 917.064 kb on + strandat 917.066 kb on - strandat 917.095 kb on - strandat 917.102 kb on + strandat 917.199 kb on - strandat 917.234 kb on - strandat 917.307 kb on + strandat 917.628 kb on + strand, within Shewana3_0797at 917.677 kb on - strand, within Shewana3_0797

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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915,727 - Shewana3_0795 0.30 +2.0
915,853 - Shewana3_0795 0.46 -0.2
915,910 + Shewana3_0795 0.53 -2.0
915,951 - Shewana3_0795 0.59 -2.4
915,966 - Shewana3_0795 0.61 -1.3
915,966 - Shewana3_0795 0.61 -0.7
916,043 - Shewana3_0795 0.71 +0.2
916,043 - Shewana3_0795 0.71 -0.9
916,099 + Shewana3_0795 0.78 +0.1
916,133 + Shewana3_0795 0.82 -1.4
916,189 + Shewana3_0795 0.90 -0.0
916,222 - -0.8
916,222 - +0.0
916,222 - +0.4
916,222 - +2.4
916,222 - +2.0
916,247 + -5.5
916,249 + +0.2
916,249 + -1.1
916,249 + -0.9
916,249 + -0.6
916,249 + +0.5
916,257 - -1.0
916,257 - -0.9
916,257 - -0.8
916,257 - -0.8
916,409 + -0.2
916,414 + -1.8
916,414 + -0.7
916,524 - Shewana3_0796 0.22 +2.0
916,564 + Shewana3_0796 0.30 +1.8
916,564 + Shewana3_0796 0.30 -0.6
916,564 + Shewana3_0796 0.30 -1.2
916,572 - Shewana3_0796 0.32 -1.2
916,572 - Shewana3_0796 0.32 -0.8
916,572 - Shewana3_0796 0.32 +0.0
916,633 + Shewana3_0796 0.44 -0.2
916,641 - Shewana3_0796 0.45 -1.1
916,641 - Shewana3_0796 0.45 -0.6
916,641 - +2.0
916,641 - Shewana3_0796 0.45 +0.4
916,853 + Shewana3_0796 0.88 -0.5
916,885 - -0.6
917,022 - -0.3
917,028 + +1.0
917,058 + -0.5
917,064 + -2.4
917,066 - +0.7
917,095 - -0.2
917,102 + -3.5
917,199 - -0.1
917,234 - +0.4
917,307 + +2.0
917,628 + Shewana3_0797 0.16 +0.9
917,677 - Shewana3_0797 0.17 +1.2

Or see this region's nucleotide sequence