Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0790 and Shewana3_0791 are separated by 168 nucleotides Shewana3_0791 and Shewana3_0792 are separated by 2 nucleotides Shewana3_0792 and Shewana3_0793 are separated by 7 nucleotides
Shewana3_0790: Shewana3_0790 - hypothetical protein (RefSeq), at 910,911 to 911,546
_0790
Shewana3_0791: Shewana3_0791 - UDP-N-acetylmuramate (RefSeq), at 911,715 to 913,112
_0791
Shewana3_0792: Shewana3_0792 - aromatic acid decarboxylase (RefSeq), at 913,115 to 913,774
_0792
Shewana3_0793: Shewana3_0793 - hypoxanthine phosphoribosyltransferase (RefSeq), at 913,782 to 914,312
_0793
Position (kb)
911
912
913
914 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 910.768 kb on - strand at 910.796 kb on - strand at 910.972 kb on - strand at 911.086 kb on + strand, within Shewana3_0790 at 911.099 kb on + strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.242 kb on - strand, within Shewana3_0790 at 911.407 kb on - strand, within Shewana3_0790 at 911.515 kb on + strand at 911.515 kb on + strand at 911.617 kb on - strand at 911.791 kb on + strand at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 912.344 kb on + strand, within Shewana3_0791 at 912.360 kb on + strand, within Shewana3_0791 at 912.841 kb on + strand, within Shewana3_0791 at 912.949 kb on + strand, within Shewana3_0791 at 913.977 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 910,768 - -0.2 910,796 - -1.3 910,972 - +1.2 911,086 + Shewana3_0790 0.28 +0.3 911,099 + Shewana3_0790 0.30 +1.7 911,181 - Shewana3_0790 0.42 -0.8 911,181 - Shewana3_0790 0.42 -0.7 911,242 - Shewana3_0790 0.52 -2.5 911,407 - Shewana3_0790 0.78 -1.4 911,515 + -1.3 911,515 + -2.5 911,617 - +1.4 911,791 + +3.0 911,964 + Shewana3_0791 0.18 +0.8 911,964 + Shewana3_0791 0.18 +2.3 911,964 + Shewana3_0791 0.18 +1.5 912,344 + Shewana3_0791 0.45 +1.1 912,360 + Shewana3_0791 0.46 +1.1 912,841 + Shewana3_0791 0.81 +0.3 912,949 + Shewana3_0791 0.88 +1.0 913,977 + Shewana3_0793 0.37 +1.7 913,995 + Shewana3_0793 0.40 +2.5 913,995 + Shewana3_0793 0.40 +1.7
Or see this region's nucleotide sequence