Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0771 and Shewana3_0772 are separated by 118 nucleotides Shewana3_0772 and Shewana3_0773 overlap by 1 nucleotides Shewana3_0773 and Shewana3_0774 are separated by 144 nucleotides
Shewana3_0771: Shewana3_0771 - pantoate--beta-alanine ligase (RefSeq), at 893,716 to 894,129
_0771
Shewana3_0772: Shewana3_0772 - invasion gene expression up-regulator, SirB (RefSeq), at 894,248 to 894,643
_0772
Shewana3_0773: Shewana3_0773 - hypothetical protein (RefSeq), at 894,643 to 895,431
_0773
Shewana3_0774: Shewana3_0774 - hypothetical protein (RefSeq), at 895,576 to 896,823
_0774
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1
2 at 893.696 kb on + strand at 893.704 kb on - strand at 893.774 kb on - strand, within Shewana3_0771 at 893.808 kb on - strand, within Shewana3_0771 at 893.838 kb on + strand, within Shewana3_0771 at 893.927 kb on + strand, within Shewana3_0771 at 893.935 kb on - strand, within Shewana3_0771 at 894.021 kb on + strand, within Shewana3_0771 at 894.190 kb on + strand at 894.208 kb on + strand at 894.290 kb on + strand, within Shewana3_0772 at 894.354 kb on + strand, within Shewana3_0772 at 894.425 kb on + strand, within Shewana3_0772 at 894.462 kb on + strand, within Shewana3_0772 at 894.899 kb on + strand, within Shewana3_0773 at 894.934 kb on + strand, within Shewana3_0773 at 894.990 kb on + strand, within Shewana3_0773 at 895.101 kb on + strand, within Shewana3_0773 at 895.594 kb on + strand at 895.640 kb on + strand at 895.829 kb on + strand, within Shewana3_0774 at 896.219 kb on + strand, within Shewana3_0774 at 896.221 kb on + strand, within Shewana3_0774 at 896.252 kb on + strand, within Shewana3_0774
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 893,696 + -1.8 893,704 - +0.6 893,774 - Shewana3_0771 0.14 +0.5 893,808 - Shewana3_0771 0.22 +1.9 893,838 + Shewana3_0771 0.29 -0.7 893,927 + Shewana3_0771 0.51 -2.2 893,935 - Shewana3_0771 0.53 -0.1 894,021 + Shewana3_0771 0.74 -1.0 894,190 + -1.2 894,208 + -1.2 894,290 + Shewana3_0772 0.11 +0.9 894,354 + Shewana3_0772 0.27 -0.0 894,425 + Shewana3_0772 0.45 -0.1 894,462 + Shewana3_0772 0.54 +0.9 894,899 + Shewana3_0773 0.32 +1.6 894,934 + Shewana3_0773 0.37 +0.1 894,990 + Shewana3_0773 0.44 +0.6 895,101 + Shewana3_0773 0.58 -0.3 895,594 + +0.4 895,640 + -0.3 895,829 + Shewana3_0774 0.20 +1.5 896,219 + Shewana3_0774 0.52 -0.8 896,221 + Shewana3_0774 0.52 +0.9 896,252 + Shewana3_0774 0.54 +1.4
Or see this region's nucleotide sequence