Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0727 and Shewana3_0728 are separated by 15 nucleotides Shewana3_0728 and Shewana3_0729 are separated by 26 nucleotides Shewana3_0729 and Shewana3_0730 are separated by 56 nucleotides
Shewana3_0727: Shewana3_0727 - hypothetical protein (RefSeq), at 843,684 to 844,136
_0727
Shewana3_0728: Shewana3_0728 - calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq), at 844,152 to 844,991
_0728
Shewana3_0729: Shewana3_0729 - hypothetical protein (RefSeq), at 845,018 to 845,593
_0729
Shewana3_0730: Shewana3_0730 - DNA topoisomerase IV subunit B (RefSeq), at 845,650 to 847,536
_0730
Position (kb)
845
846 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 844.020 kb on + strand, within Shewana3_0727 at 844.020 kb on + strand, within Shewana3_0727 at 844.020 kb on + strand, within Shewana3_0727 at 844.020 kb on + strand, within Shewana3_0727 at 844.020 kb on + strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.078 kb on - strand, within Shewana3_0727 at 844.532 kb on + strand, within Shewana3_0728 at 844.598 kb on + strand, within Shewana3_0728 at 844.598 kb on + strand, within Shewana3_0728 at 844.606 kb on - strand, within Shewana3_0728 at 844.606 kb on - strand, within Shewana3_0728 at 844.648 kb on + strand, within Shewana3_0728 at 844.685 kb on - strand, within Shewana3_0728 at 844.744 kb on - strand, within Shewana3_0728 at 844.749 kb on + strand, within Shewana3_0728 at 844.751 kb on - strand, within Shewana3_0728 at 844.756 kb on - strand, within Shewana3_0728 at 844.927 kb on + strand at 845.023 kb on + strand at 845.083 kb on + strand, within Shewana3_0729 at 845.091 kb on - strand, within Shewana3_0729 at 845.091 kb on - strand, within Shewana3_0729 at 845.276 kb on + strand, within Shewana3_0729 at 845.301 kb on + strand, within Shewana3_0729 at 845.320 kb on + strand, within Shewana3_0729 at 845.341 kb on + strand, within Shewana3_0729 at 845.470 kb on - strand, within Shewana3_0729 at 845.490 kb on + strand, within Shewana3_0729
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 844,020 + Shewana3_0727 0.74 +1.6 844,020 + Shewana3_0727 0.74 +1.2 844,020 + Shewana3_0727 0.74 +1.1 844,020 + Shewana3_0727 0.74 +0.4 844,020 + Shewana3_0727 0.74 +2.2 844,028 - Shewana3_0727 0.76 -1.1 844,028 - Shewana3_0727 0.76 -0.3 844,028 - Shewana3_0727 0.76 -2.3 844,028 - Shewana3_0727 0.76 -0.4 844,028 - Shewana3_0727 0.76 +0.1 844,028 - Shewana3_0727 0.76 +0.3 844,028 - Shewana3_0727 0.76 -0.7 844,028 - Shewana3_0727 0.76 +1.5 844,078 - Shewana3_0727 0.87 -0.4 844,532 + Shewana3_0728 0.45 +2.6 844,598 + Shewana3_0728 0.53 +1.9 844,598 + Shewana3_0728 0.53 +1.9 844,606 - Shewana3_0728 0.54 +0.8 844,606 - Shewana3_0728 0.54 -1.4 844,648 + Shewana3_0728 0.59 +1.9 844,685 - Shewana3_0728 0.63 +0.8 844,744 - Shewana3_0728 0.70 +1.1 844,749 + Shewana3_0728 0.71 +2.1 844,751 - Shewana3_0728 0.71 +1.5 844,756 - Shewana3_0728 0.72 +0.5 844,927 + +2.0 845,023 + -5.3 845,083 + Shewana3_0729 0.11 -0.0 845,091 - Shewana3_0729 0.13 -0.5 845,091 - Shewana3_0729 0.13 -2.7 845,276 + Shewana3_0729 0.45 -2.0 845,301 + Shewana3_0729 0.49 +0.5 845,320 + Shewana3_0729 0.52 +0.1 845,341 + Shewana3_0729 0.56 -2.3 845,470 - Shewana3_0729 0.78 -0.6 845,490 + Shewana3_0729 0.82 -1.1
Or see this region's nucleotide sequence