Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0700 and rpsF are separated by 212 nucleotides rpsF and Shewana3_0702 are separated by 23 nucleotides Shewana3_0702 and rpsR are separated by 11 nucleotides rpsR and rplI are separated by 36 nucleotides
Shewana3_0700: Shewana3_0700 - hypothetical protein (RefSeq), at 817,318 to 818,073
_0700
Shewana3_0701: rpsF - 30S ribosomal protein S6 (RefSeq), at 818,286 to 818,681
rpsF
Shewana3_0702: Shewana3_0702 - primosomal replication protein N (RefSeq), at 818,705 to 818,995
_0702
Shewana3_0703: rpsR - 30S ribosomal protein S18 (RefSeq), at 819,007 to 819,234
rpsR
Shewana3_0704: rplI - 50S ribosomal protein L9 (RefSeq), at 819,271 to 819,723
rplI
Position (kb) 818
819 Strain fitness (log2 ratio) -2
-1
0
1 at 817.338 kb on + strand at 817.338 kb on + strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.373 kb on - strand at 817.649 kb on + strand, within Shewana3_0700 at 817.763 kb on + strand, within Shewana3_0700 at 817.765 kb on - strand, within Shewana3_0700 at 817.771 kb on - strand, within Shewana3_0700 at 817.773 kb on - strand, within Shewana3_0700 at 817.814 kb on - strand, within Shewana3_0700 at 817.824 kb on - strand, within Shewana3_0700 at 817.902 kb on + strand, within Shewana3_0700 at 817.933 kb on + strand, within Shewana3_0700 at 819.451 kb on + strand, within rplI
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 817,338 + -0.3 817,338 + -1.0 817,346 - +0.5 817,346 - -0.5 817,346 - -0.7 817,373 - -0.5 817,649 + Shewana3_0700 0.44 -2.3 817,763 + Shewana3_0700 0.59 -0.6 817,765 - Shewana3_0700 0.59 +1.4 817,771 - Shewana3_0700 0.60 +1.5 817,773 - Shewana3_0700 0.60 -0.5 817,814 - Shewana3_0700 0.66 +0.4 817,824 - Shewana3_0700 0.67 -1.4 817,902 + Shewana3_0700 0.77 -0.2 817,933 + Shewana3_0700 0.81 +0.5 819,451 + rplI Shewana3_0704 0.40 -0.6
Or see this region's nucleotide sequence