Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0699 and Shewana3_0700 are separated by 181 nucleotides Shewana3_0700 and rpsF are separated by 212 nucleotides rpsF and Shewana3_0702 are separated by 23 nucleotides Shewana3_0702 and rpsR are separated by 11 nucleotides
Shewana3_0699: Shewana3_0699 - major facilitator transporter (RefSeq), at 815,712 to 817,136
_0699
Shewana3_0700: Shewana3_0700 - hypothetical protein (RefSeq), at 817,318 to 818,073
_0700
Shewana3_0701: rpsF - 30S ribosomal protein S6 (RefSeq), at 818,286 to 818,681
rpsF
Shewana3_0702: Shewana3_0702 - primosomal replication protein N (RefSeq), at 818,705 to 818,995
_0702
Shewana3_0703: rpsR - 30S ribosomal protein S18 (RefSeq), at 819,007 to 819,234
rpsR
Position (kb) 817
818
819 Strain fitness (log2 ratio) -2
-1
0
1 at 816.527 kb on + strand, within Shewana3_0699 at 816.617 kb on + strand, within Shewana3_0699 at 816.654 kb on + strand, within Shewana3_0699 at 816.667 kb on - strand, within Shewana3_0699 at 816.685 kb on - strand, within Shewana3_0699 at 816.958 kb on + strand, within Shewana3_0699 at 817.154 kb on + strand at 817.162 kb on - strand at 817.172 kb on - strand at 817.210 kb on - strand at 817.338 kb on + strand at 817.338 kb on + strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.373 kb on - strand at 817.649 kb on + strand, within Shewana3_0700 at 817.763 kb on + strand, within Shewana3_0700 at 817.765 kb on - strand, within Shewana3_0700 at 817.771 kb on - strand, within Shewana3_0700 at 817.773 kb on - strand, within Shewana3_0700 at 817.814 kb on - strand, within Shewana3_0700 at 817.824 kb on - strand, within Shewana3_0700 at 817.902 kb on + strand, within Shewana3_0700 at 817.933 kb on + strand, within Shewana3_0700
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 816,527 + Shewana3_0699 0.57 -0.6 816,617 + Shewana3_0699 0.64 -1.3 816,654 + Shewana3_0699 0.66 -0.0 816,667 - Shewana3_0699 0.67 -0.8 816,685 - Shewana3_0699 0.68 -0.3 816,958 + Shewana3_0699 0.87 -0.6 817,154 + -0.5 817,162 - -0.1 817,172 - +0.1 817,210 - -1.7 817,338 + -0.3 817,338 + -1.0 817,346 - +0.5 817,346 - -0.5 817,346 - -0.7 817,373 - -0.5 817,649 + Shewana3_0700 0.44 -2.3 817,763 + Shewana3_0700 0.59 -0.6 817,765 - Shewana3_0700 0.59 +1.4 817,771 - Shewana3_0700 0.60 +1.5 817,773 - Shewana3_0700 0.60 -0.5 817,814 - Shewana3_0700 0.66 +0.4 817,824 - Shewana3_0700 0.67 -1.4 817,902 + Shewana3_0700 0.77 -0.2 817,933 + Shewana3_0700 0.81 +0.5
Or see this region's nucleotide sequence