Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0678

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0677 and Shewana3_0678 are separated by 562 nucleotidesShewana3_0678 and Shewana3_0679 overlap by 4 nucleotidesShewana3_0679 and Shewana3_0680 are separated by 54 nucleotides Shewana3_0677: Shewana3_0677 - KpsF/GutQ family protein (RefSeq), at 795,919 to 796,896 _0677 Shewana3_0678: Shewana3_0678 - ABC transporter related (RefSeq), at 797,459 to 798,277 _0678 Shewana3_0679: Shewana3_0679 - hypothetical protein (RefSeq), at 798,274 to 799,059 _0679 Shewana3_0680: Shewana3_0680 - hypothetical protein (RefSeq), at 799,114 to 799,587 _0680 Position (kb) 797 798 799Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 796.987 kb on - strandat 797.034 kb on - strandat 797.366 kb on - strandat 797.409 kb on + strandat 797.651 kb on + strand, within Shewana3_0678at 797.664 kb on + strand, within Shewana3_0678at 797.778 kb on + strand, within Shewana3_0678at 798.117 kb on + strand, within Shewana3_0678at 798.188 kb on + strand, within Shewana3_0678at 798.207 kb on + strandat 798.207 kb on + strandat 798.248 kb on + strandat 798.521 kb on + strand, within Shewana3_0679at 798.550 kb on + strand, within Shewana3_0679at 798.727 kb on + strand, within Shewana3_0679at 798.925 kb on + strand, within Shewana3_0679at 798.938 kb on + strand, within Shewana3_0679at 798.973 kb on + strand, within Shewana3_0679at 798.983 kb on + strandat 799.210 kb on + strand, within Shewana3_0680at 799.229 kb on + strand, within Shewana3_0680

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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796,987 - -0.4
797,034 - -2.5
797,366 - -3.0
797,409 + -4.2
797,651 + Shewana3_0678 0.23 -1.5
797,664 + Shewana3_0678 0.25 -1.7
797,778 + Shewana3_0678 0.39 -2.4
798,117 + Shewana3_0678 0.80 -3.7
798,188 + Shewana3_0678 0.89 -6.0
798,207 + -5.4
798,207 + -5.0
798,248 + -5.2
798,521 + Shewana3_0679 0.31 -4.6
798,550 + Shewana3_0679 0.35 -1.6
798,727 + Shewana3_0679 0.58 -1.4
798,925 + Shewana3_0679 0.83 -1.4
798,938 + Shewana3_0679 0.84 -1.8
798,973 + Shewana3_0679 0.89 -3.7
798,983 + -1.6
799,210 + Shewana3_0680 0.20 -2.7
799,229 + Shewana3_0680 0.24 -2.9

Or see this region's nucleotide sequence