Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0660 and Shewana3_0661 are separated by 34 nucleotides Shewana3_0661 and Shewana3_0662 are separated by 159 nucleotides Shewana3_0662 and Shewana3_0663 are separated by 270 nucleotides
Shewana3_0660: Shewana3_0660 - hypothetical protein (RefSeq), at 782,039 to 782,809
_0660
Shewana3_0661: Shewana3_0661 - hypothetical protein (RefSeq), at 782,844 to 783,428
_0661
Shewana3_0662: Shewana3_0662 - hypothetical protein (RefSeq), at 783,588 to 783,935
_0662
Shewana3_0663: Shewana3_0663 - protein of unknown function RIO1 (RefSeq), at 784,206 to 785,063
_0663
Position (kb) 783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 782.623 kb on + strand, within Shewana3_0660 at 782.633 kb on + strand, within Shewana3_0660 at 782.752 kb on + strand at 782.784 kb on + strand at 782.836 kb on - strand at 782.865 kb on + strand at 782.891 kb on - strand at 783.109 kb on + strand, within Shewana3_0661 at 783.162 kb on + strand, within Shewana3_0661 at 783.340 kb on - strand, within Shewana3_0661 at 783.352 kb on - strand, within Shewana3_0661 at 783.385 kb on - strand at 783.534 kb on + strand at 783.814 kb on - strand, within Shewana3_0662 at 783.921 kb on - strand at 783.944 kb on + strand at 784.183 kb on - strand at 784.192 kb on + strand at 784.200 kb on - strand at 784.260 kb on + strand at 784.297 kb on - strand, within Shewana3_0663 at 784.344 kb on - strand, within Shewana3_0663 at 784.371 kb on - strand, within Shewana3_0663 at 784.371 kb on - strand, within Shewana3_0663 at 784.425 kb on - strand, within Shewana3_0663 at 784.533 kb on - strand, within Shewana3_0663 at 784.604 kb on - strand, within Shewana3_0663 at 784.677 kb on + strand, within Shewana3_0663 at 784.677 kb on + strand, within Shewana3_0663 at 784.692 kb on + strand, within Shewana3_0663 at 784.692 kb on + strand, within Shewana3_0663 at 784.772 kb on - strand, within Shewana3_0663 at 784.785 kb on + strand, within Shewana3_0663 at 784.785 kb on + strand, within Shewana3_0663 at 784.785 kb on + strand, within Shewana3_0663 at 784.855 kb on + strand, within Shewana3_0663
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 782,623 + Shewana3_0660 0.76 -0.2 782,633 + Shewana3_0660 0.77 +0.0 782,752 + +0.5 782,784 + +0.1 782,836 - -0.2 782,865 + -0.3 782,891 - +0.0 783,109 + Shewana3_0661 0.45 +0.7 783,162 + Shewana3_0661 0.54 -0.8 783,340 - Shewana3_0661 0.85 +1.8 783,352 - Shewana3_0661 0.87 -0.4 783,385 - +0.3 783,534 + +0.4 783,814 - Shewana3_0662 0.65 -0.2 783,921 - +2.4 783,944 + +0.2 784,183 - -3.1 784,192 + +0.5 784,200 - -1.5 784,260 + +0.5 784,297 - Shewana3_0663 0.11 -0.1 784,344 - Shewana3_0663 0.16 -0.4 784,371 - Shewana3_0663 0.19 -1.5 784,371 - Shewana3_0663 0.19 -2.4 784,425 - Shewana3_0663 0.26 -1.4 784,533 - Shewana3_0663 0.38 -2.7 784,604 - Shewana3_0663 0.46 -0.2 784,677 + Shewana3_0663 0.55 +0.6 784,677 + Shewana3_0663 0.55 +0.4 784,692 + Shewana3_0663 0.57 +1.1 784,692 + Shewana3_0663 0.57 +0.2 784,772 - Shewana3_0663 0.66 -1.3 784,785 + Shewana3_0663 0.67 +0.3 784,785 + Shewana3_0663 0.67 +1.2 784,785 + Shewana3_0663 0.67 +0.2 784,855 + Shewana3_0663 0.76 +0.6
Or see this region's nucleotide sequence