Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0657 and nrfA are separated by 224 nucleotides nrfA and Shewana3_0659 are separated by 175 nucleotides
Shewana3_0657: Shewana3_0657 - nitrate/nitrite sensor protein NarQ (RefSeq), at 776,275 to 778,071
_0657
Shewana3_0658: nrfA - cytochrome c552 (RefSeq), at 778,296 to 779,717
nrfA
Shewana3_0659: Shewana3_0659 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 779,893 to 781,833
_0659
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 777.445 kb on - strand, within Shewana3_0657 at 777.450 kb on - strand, within Shewana3_0657 at 777.450 kb on - strand, within Shewana3_0657 at 777.636 kb on + strand, within Shewana3_0657 at 777.636 kb on + strand, within Shewana3_0657 at 777.702 kb on - strand, within Shewana3_0657 at 777.737 kb on + strand, within Shewana3_0657 at 777.837 kb on + strand, within Shewana3_0657 at 778.088 kb on + strand at 778.246 kb on + strand at 778.254 kb on - strand at 778.255 kb on - strand at 778.352 kb on - strand at 778.405 kb on - strand at 778.574 kb on + strand, within nrfA at 778.574 kb on + strand, within nrfA at 778.603 kb on - strand, within nrfA at 778.685 kb on - strand, within nrfA at 778.698 kb on + strand, within nrfA at 778.706 kb on - strand, within nrfA at 778.726 kb on - strand, within nrfA at 778.733 kb on + strand, within nrfA at 778.741 kb on - strand, within nrfA at 779.042 kb on + strand, within nrfA at 779.042 kb on + strand, within nrfA at 779.050 kb on - strand, within nrfA at 779.050 kb on - strand, within nrfA at 779.072 kb on - strand, within nrfA at 779.333 kb on + strand, within nrfA at 779.391 kb on - strand, within nrfA at 779.496 kb on - strand, within nrfA at 779.534 kb on + strand, within nrfA at 779.612 kb on + strand at 779.633 kb on - strand at 779.885 kb on - strand at 779.898 kb on + strand at 779.929 kb on - strand at 780.162 kb on - strand, within Shewana3_0659 at 780.166 kb on + strand, within Shewana3_0659 at 780.166 kb on + strand, within Shewana3_0659 at 780.174 kb on - strand, within Shewana3_0659 at 780.174 kb on - strand, within Shewana3_0659 at 780.330 kb on - strand, within Shewana3_0659 at 780.419 kb on - strand, within Shewana3_0659 at 780.443 kb on - strand, within Shewana3_0659 at 780.523 kb on - strand, within Shewana3_0659 at 780.558 kb on + strand, within Shewana3_0659
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 777,445 - Shewana3_0657 0.65 +0.3 777,450 - Shewana3_0657 0.65 +0.0 777,450 - Shewana3_0657 0.65 +0.7 777,636 + Shewana3_0657 0.76 +0.1 777,636 + Shewana3_0657 0.76 +0.2 777,702 - Shewana3_0657 0.79 +1.0 777,737 + Shewana3_0657 0.81 +0.4 777,837 + Shewana3_0657 0.87 +0.5 778,088 + -1.3 778,246 + -0.1 778,254 - -0.3 778,255 - -1.2 778,352 - -0.9 778,405 - -0.5 778,574 + nrfA Shewana3_0658 0.20 -1.1 778,574 + nrfA Shewana3_0658 0.20 +1.0 778,603 - nrfA Shewana3_0658 0.22 -0.8 778,685 - nrfA Shewana3_0658 0.27 -1.4 778,698 + nrfA Shewana3_0658 0.28 +0.5 778,706 - nrfA Shewana3_0658 0.29 -1.1 778,726 - nrfA Shewana3_0658 0.30 +1.4 778,733 + nrfA Shewana3_0658 0.31 +1.9 778,741 - nrfA Shewana3_0658 0.31 -0.2 779,042 + nrfA Shewana3_0658 0.52 -0.2 779,042 + nrfA Shewana3_0658 0.52 +0.1 779,050 - nrfA Shewana3_0658 0.53 -1.2 779,050 - nrfA Shewana3_0658 0.53 -1.6 779,072 - nrfA Shewana3_0658 0.55 -0.5 779,333 + nrfA Shewana3_0658 0.73 +1.2 779,391 - nrfA Shewana3_0658 0.77 -0.2 779,496 - nrfA Shewana3_0658 0.84 -3.1 779,534 + nrfA Shewana3_0658 0.87 -0.2 779,612 + +0.9 779,633 - -2.5 779,885 - -0.1 779,898 + -0.1 779,929 - -0.1 780,162 - Shewana3_0659 0.14 +0.4 780,166 + Shewana3_0659 0.14 -0.3 780,166 + Shewana3_0659 0.14 -0.5 780,174 - Shewana3_0659 0.14 +0.1 780,174 - Shewana3_0659 0.14 -0.2 780,330 - Shewana3_0659 0.23 -1.1 780,419 - Shewana3_0659 0.27 -1.3 780,443 - Shewana3_0659 0.28 +0.4 780,523 - Shewana3_0659 0.32 -0.6 780,558 + Shewana3_0659 0.34 -1.3
Or see this region's nucleotide sequence