Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sspA and Shewana3_0605 overlap by 1 nucleotides Shewana3_0605 and Shewana3_0606 are separated by 155 nucleotides Shewana3_0606 and Shewana3_0607 are separated by 455 nucleotides
Shewana3_0604: sspA - stringent starvation protein A (RefSeq), at 707,522 to 708,151
sspA
Shewana3_0605: Shewana3_0605 - ClpXP protease specificity-enhancing factor (RefSeq), at 708,151 to 708,588
_0605
Shewana3_0606: Shewana3_0606 - aminodeoxychorismate synthase, glutamine amidotransferase subunit (RefSeq), at 708,744 to 709,319
_0606
Shewana3_0607: Shewana3_0607 - peptidase S9 prolyl oligopeptidase (RefSeq), at 709,775 to 712,255
_0607
Position (kb) 708
709
710 Strain fitness (log2 ratio) -1
0
1 at 708.451 kb on + strand, within Shewana3_0605 at 708.603 kb on + strand at 708.678 kb on - strand at 708.810 kb on + strand, within Shewana3_0606 at 708.900 kb on - strand, within Shewana3_0606 at 709.085 kb on + strand, within Shewana3_0606 at 709.343 kb on + strand at 709.351 kb on - strand at 709.499 kb on + strand at 709.757 kb on + strand at 709.886 kb on + strand at 709.926 kb on + strand at 709.926 kb on + strand at 709.926 kb on + strand at 709.948 kb on + strand at 710.075 kb on - strand, within Shewana3_0607 at 710.135 kb on + strand, within Shewana3_0607 at 710.143 kb on - strand, within Shewana3_0607 at 710.153 kb on - strand, within Shewana3_0607 at 710.300 kb on - strand, within Shewana3_0607
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 708,451 + Shewana3_0605 0.68 -0.0 708,603 + -0.9 708,678 - -0.3 708,810 + Shewana3_0606 0.11 +0.6 708,900 - Shewana3_0606 0.27 +0.2 709,085 + Shewana3_0606 0.59 -0.2 709,343 + -0.5 709,351 - -1.5 709,499 + +0.4 709,757 + +0.8 709,886 + -0.5 709,926 + +0.4 709,926 + -0.9 709,926 + -0.4 709,948 + -1.2 710,075 - Shewana3_0607 0.12 +1.2 710,135 + Shewana3_0607 0.15 +0.6 710,143 - Shewana3_0607 0.15 +0.2 710,153 - Shewana3_0607 0.15 -1.7 710,300 - Shewana3_0607 0.21 -0.9
Or see this region's nucleotide sequence