Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0548 and Shewana3_0549 are separated by 74 nucleotides Shewana3_0549 and Shewana3_0550 are separated by 43 nucleotides Shewana3_0550 and Shewana3_0551 are separated by 6 nucleotides
Shewana3_0548: Shewana3_0548 - no description, at 643,219 to 644,016
_0548
Shewana3_0549: Shewana3_0549 - hypothetical protein (RefSeq), at 644,091 to 644,555
_0549
Shewana3_0550: Shewana3_0550 - hypothetical protein (RefSeq), at 644,599 to 645,108
_0550
Shewana3_0551: Shewana3_0551 - hypothetical protein (RefSeq), at 645,115 to 645,429
_0551
Position (kb) 644
645 Strain fitness (log2 ratio) -2
-1
0
1 at 643.124 kb on + strand at 643.280 kb on - strand at 643.280 kb on - strand at 643.300 kb on - strand, within Shewana3_0548 at 643.388 kb on + strand, within Shewana3_0548 at 643.406 kb on - strand, within Shewana3_0548 at 643.602 kb on + strand, within Shewana3_0548 at 643.602 kb on + strand, within Shewana3_0548 at 643.709 kb on - strand, within Shewana3_0548 at 643.944 kb on - strand at 644.047 kb on + strand at 644.079 kb on - strand at 644.125 kb on - strand at 644.143 kb on + strand, within Shewana3_0549 at 644.201 kb on - strand, within Shewana3_0549 at 644.202 kb on + strand, within Shewana3_0549 at 644.231 kb on - strand, within Shewana3_0549 at 644.290 kb on - strand, within Shewana3_0549 at 644.321 kb on + strand, within Shewana3_0549 at 644.407 kb on + strand, within Shewana3_0549 at 644.843 kb on + strand, within Shewana3_0550 at 644.898 kb on + strand, within Shewana3_0550 at 644.924 kb on + strand, within Shewana3_0550 at 645.151 kb on + strand, within Shewana3_0551 at 645.172 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.322 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 643,124 + +0.5 643,280 - +0.4 643,280 - -0.1 643,300 - Shewana3_0548 0.10 +0.4 643,388 + Shewana3_0548 0.21 -0.3 643,406 - Shewana3_0548 0.23 -0.9 643,602 + Shewana3_0548 0.48 -0.9 643,602 + Shewana3_0548 0.48 -1.7 643,709 - Shewana3_0548 0.61 -0.2 643,944 - +0.1 644,047 + -2.3 644,079 - +1.2 644,125 - -0.6 644,143 + Shewana3_0549 0.11 -0.2 644,201 - Shewana3_0549 0.24 +1.2 644,202 + Shewana3_0549 0.24 -0.8 644,231 - Shewana3_0549 0.30 -1.2 644,290 - Shewana3_0549 0.43 -0.2 644,321 + Shewana3_0549 0.49 -0.8 644,407 + Shewana3_0549 0.68 +0.3 644,843 + Shewana3_0550 0.48 -0.5 644,898 + Shewana3_0550 0.59 +0.8 644,924 + Shewana3_0550 0.64 +0.7 645,151 + Shewana3_0551 0.11 -0.0 645,172 + Shewana3_0551 0.18 -1.0 645,239 + Shewana3_0551 0.39 -0.9 645,239 + Shewana3_0551 0.39 -0.3 645,314 + Shewana3_0551 0.63 +0.0 645,314 + Shewana3_0551 0.63 -0.2 645,322 - Shewana3_0551 0.66 +1.5 645,362 - Shewana3_0551 0.78 -1.1 645,362 - Shewana3_0551 0.78 -0.4
Or see this region's nucleotide sequence