Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0497 and Shewana3_0498 overlap by 4 nucleotides Shewana3_0498 and Shewana3_0499 are separated by 213 nucleotides
Shewana3_0497: Shewana3_0497 - ABC transporter related (RefSeq), at 579,751 to 580,797
_0497
Shewana3_0498: Shewana3_0498 - copper ABC transporter, permease protein (RefSeq), at 580,794 to 581,681
_0498
Shewana3_0499: Shewana3_0499 - transcriptional regulator (RefSeq), at 581,895 to 583,178
_0499
Position (kb) 580
581
582 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 579.989 kb on - strand, within Shewana3_0497 at 579.994 kb on - strand, within Shewana3_0497 at 580.016 kb on + strand, within Shewana3_0497 at 580.147 kb on - strand, within Shewana3_0497 at 580.183 kb on - strand, within Shewana3_0497 at 580.232 kb on - strand, within Shewana3_0497 at 580.258 kb on + strand, within Shewana3_0497 at 580.268 kb on + strand, within Shewana3_0497 at 580.473 kb on + strand, within Shewana3_0497 at 580.473 kb on + strand, within Shewana3_0497 at 580.481 kb on - strand, within Shewana3_0497 at 580.710 kb on + strand at 580.978 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.981 kb on + strand, within Shewana3_0498 at 580.989 kb on - strand, within Shewana3_0498 at 580.989 kb on - strand, within Shewana3_0498 at 580.991 kb on + strand, within Shewana3_0498 at 580.991 kb on + strand, within Shewana3_0498 at 581.298 kb on + strand, within Shewana3_0498 at 581.368 kb on - strand, within Shewana3_0498 at 581.415 kb on + strand, within Shewana3_0498 at 581.416 kb on + strand, within Shewana3_0498 at 581.429 kb on - strand, within Shewana3_0498 at 581.441 kb on - strand, within Shewana3_0498 at 581.522 kb on - strand, within Shewana3_0498 at 581.553 kb on + strand, within Shewana3_0498 at 581.558 kb on + strand, within Shewana3_0498 at 581.558 kb on + strand, within Shewana3_0498 at 581.561 kb on - strand, within Shewana3_0498 at 581.563 kb on + strand, within Shewana3_0498 at 581.874 kb on + strand at 581.906 kb on - strand at 582.011 kb on + strand at 582.013 kb on + strand at 582.072 kb on - strand, within Shewana3_0499 at 582.187 kb on + strand, within Shewana3_0499 at 582.195 kb on - strand, within Shewana3_0499 at 582.204 kb on + strand, within Shewana3_0499 at 582.323 kb on - strand, within Shewana3_0499 at 582.420 kb on - strand, within Shewana3_0499 at 582.420 kb on - strand, within Shewana3_0499 at 582.436 kb on + strand, within Shewana3_0499 at 582.452 kb on - strand, within Shewana3_0499 at 582.520 kb on - strand, within Shewana3_0499
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 579,989 - Shewana3_0497 0.23 -0.8 579,994 - Shewana3_0497 0.23 +1.6 580,016 + Shewana3_0497 0.25 -0.0 580,147 - Shewana3_0497 0.38 +0.3 580,183 - Shewana3_0497 0.41 -2.5 580,232 - Shewana3_0497 0.46 -1.2 580,258 + Shewana3_0497 0.48 -0.1 580,268 + Shewana3_0497 0.49 -0.2 580,473 + Shewana3_0497 0.69 -1.1 580,473 + Shewana3_0497 0.69 +0.4 580,481 - Shewana3_0497 0.70 -0.1 580,710 + -0.2 580,978 + Shewana3_0498 0.21 -0.3 580,981 + Shewana3_0498 0.21 +0.4 580,981 + Shewana3_0498 0.21 -2.2 580,981 + Shewana3_0498 0.21 +0.5 580,981 + Shewana3_0498 0.21 -0.6 580,989 - Shewana3_0498 0.22 -0.7 580,989 - Shewana3_0498 0.22 +1.7 580,991 + Shewana3_0498 0.22 -0.0 580,991 + Shewana3_0498 0.22 +0.3 581,298 + Shewana3_0498 0.57 +1.6 581,368 - Shewana3_0498 0.65 -1.8 581,415 + Shewana3_0498 0.70 +0.8 581,416 + Shewana3_0498 0.70 -0.4 581,429 - Shewana3_0498 0.72 +0.5 581,441 - Shewana3_0498 0.73 +1.2 581,522 - Shewana3_0498 0.82 -0.1 581,553 + Shewana3_0498 0.85 -0.6 581,558 + Shewana3_0498 0.86 -0.2 581,558 + Shewana3_0498 0.86 +0.4 581,561 - Shewana3_0498 0.86 -1.6 581,563 + Shewana3_0498 0.87 -0.3 581,874 + +0.0 581,906 - -0.9 582,011 + -0.2 582,013 + +0.4 582,072 - Shewana3_0499 0.14 -0.3 582,187 + Shewana3_0499 0.23 -0.5 582,195 - Shewana3_0499 0.23 -0.9 582,204 + Shewana3_0499 0.24 +2.9 582,323 - Shewana3_0499 0.33 +0.5 582,420 - Shewana3_0499 0.41 +0.2 582,420 - Shewana3_0499 0.41 -1.1 582,436 + Shewana3_0499 0.42 +2.0 582,452 - Shewana3_0499 0.43 +0.5 582,520 - Shewana3_0499 0.49 -0.2
Or see this region's nucleotide sequence