Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0480 and Shewana3_0481 overlap by 10 nucleotides Shewana3_0481 and Shewana3_0482 are separated by 45 nucleotides
Shewana3_0480: Shewana3_0480 - putative PAS/PAC sensor protein (RefSeq), at 557,774 to 562,834
_0480
Shewana3_0481: Shewana3_0481 - response regulator receiver protein (RefSeq), at 562,825 to 564,396
_0481
Shewana3_0482: Shewana3_0482 - peptidase S9 prolyl oligopeptidase (RefSeq), at 564,442 to 566,502
_0482
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -1
0
1
2 at 561.844 kb on + strand, within Shewana3_0480 at 562.099 kb on + strand, within Shewana3_0480 at 562.105 kb on + strand, within Shewana3_0480 at 562.105 kb on + strand, within Shewana3_0480 at 562.147 kb on - strand, within Shewana3_0480 at 562.160 kb on - strand, within Shewana3_0480 at 562.160 kb on - strand, within Shewana3_0480 at 562.162 kb on - strand, within Shewana3_0480 at 562.216 kb on - strand, within Shewana3_0480 at 562.329 kb on - strand at 562.336 kb on + strand at 562.392 kb on + strand at 562.392 kb on + strand at 562.400 kb on - strand at 562.400 kb on - strand at 562.667 kb on + strand at 562.716 kb on + strand at 562.724 kb on - strand at 562.756 kb on + strand at 562.780 kb on - strand at 562.791 kb on + strand at 562.799 kb on - strand at 562.845 kb on + strand at 562.875 kb on + strand at 562.889 kb on - strand at 562.992 kb on + strand, within Shewana3_0481 at 563.000 kb on - strand, within Shewana3_0481 at 563.072 kb on + strand, within Shewana3_0481 at 563.160 kb on + strand, within Shewana3_0481 at 563.168 kb on - strand, within Shewana3_0481 at 563.183 kb on - strand, within Shewana3_0481 at 563.190 kb on - strand, within Shewana3_0481 at 563.192 kb on + strand, within Shewana3_0481 at 563.365 kb on - strand, within Shewana3_0481 at 563.445 kb on + strand, within Shewana3_0481 at 563.649 kb on + strand, within Shewana3_0481 at 563.793 kb on + strand, within Shewana3_0481 at 563.851 kb on - strand, within Shewana3_0481 at 563.984 kb on - strand, within Shewana3_0481 at 563.984 kb on - strand, within Shewana3_0481 at 563.995 kb on + strand, within Shewana3_0481 at 564.166 kb on - strand, within Shewana3_0481 at 564.240 kb on + strand at 564.240 kb on + strand at 564.395 kb on + strand at 564.408 kb on - strand at 564.420 kb on + strand at 564.611 kb on + strand at 564.952 kb on - strand, within Shewana3_0482 at 565.043 kb on + strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.167 kb on - strand, within Shewana3_0482
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 561,844 + Shewana3_0480 0.80 -0.2 562,099 + Shewana3_0480 0.85 +0.3 562,105 + Shewana3_0480 0.86 +0.7 562,105 + Shewana3_0480 0.86 -0.3 562,147 - Shewana3_0480 0.86 -1.5 562,160 - Shewana3_0480 0.87 -0.8 562,160 - Shewana3_0480 0.87 -0.5 562,162 - Shewana3_0480 0.87 -1.2 562,216 - Shewana3_0480 0.88 -0.3 562,329 - +0.1 562,336 + +1.2 562,392 + +0.5 562,392 + +0.0 562,400 - -0.5 562,400 - -0.9 562,667 + -1.0 562,716 + -1.3 562,724 - +0.5 562,756 + +0.6 562,780 - +0.8 562,791 + +0.8 562,799 - +0.4 562,845 + -1.1 562,875 + -0.2 562,889 - +0.4 562,992 + Shewana3_0481 0.11 +1.1 563,000 - Shewana3_0481 0.11 -0.5 563,072 + Shewana3_0481 0.16 +1.8 563,160 + Shewana3_0481 0.21 +1.6 563,168 - Shewana3_0481 0.22 -0.9 563,183 - Shewana3_0481 0.23 +1.1 563,190 - Shewana3_0481 0.23 +1.7 563,192 + Shewana3_0481 0.23 +0.7 563,365 - Shewana3_0481 0.34 -1.4 563,445 + Shewana3_0481 0.39 +0.2 563,649 + Shewana3_0481 0.52 -0.4 563,793 + Shewana3_0481 0.62 -0.1 563,851 - Shewana3_0481 0.65 +1.2 563,984 - Shewana3_0481 0.74 +2.6 563,984 - Shewana3_0481 0.74 +0.0 563,995 + Shewana3_0481 0.74 -0.2 564,166 - Shewana3_0481 0.85 +0.1 564,240 + -0.5 564,240 + +1.4 564,395 + -0.2 564,408 - -1.3 564,420 + +0.0 564,611 + +1.0 564,952 - Shewana3_0482 0.25 -1.1 565,043 + Shewana3_0482 0.29 -1.4 565,144 - Shewana3_0482 0.34 -0.2 565,144 - Shewana3_0482 0.34 +0.5 565,144 - Shewana3_0482 0.34 +0.4 565,144 - Shewana3_0482 0.34 -0.2 565,167 - Shewana3_0482 0.35 -0.6
Or see this region's nucleotide sequence