Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0476 and Shewana3_0477 are separated by 215 nucleotides Shewana3_0477 and Shewana3_0478 overlap by 4 nucleotides Shewana3_0478 and Shewana3_0479 are separated by 66 nucleotides
Shewana3_0476: Shewana3_0476 - redoxin domain-containing protein (RefSeq), at 553,569 to 554,489
_0476
Shewana3_0477: Shewana3_0477 - hypothetical protein (RefSeq), at 554,705 to 555,811
_0477
Shewana3_0478: Shewana3_0478 - putative mitomycin resistance protein (RefSeq), at 555,808 to 556,098
_0478
Shewana3_0479: Shewana3_0479 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 556,165 to 557,217
_0479
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.855 kb on - strand, within Shewana3_0476 at 553.911 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.934 kb on - strand, within Shewana3_0476 at 553.954 kb on - strand, within Shewana3_0476 at 553.983 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.323 kb on - strand, within Shewana3_0476 at 554.437 kb on - strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.554 kb on - strand at 554.607 kb on - strand at 554.612 kb on - strand at 554.989 kb on + strand, within Shewana3_0477 at 555.087 kb on - strand, within Shewana3_0477 at 555.283 kb on + strand, within Shewana3_0477 at 555.312 kb on + strand, within Shewana3_0477 at 555.410 kb on - strand, within Shewana3_0477 at 555.510 kb on - strand, within Shewana3_0477 at 555.568 kb on + strand, within Shewana3_0477 at 555.585 kb on + strand, within Shewana3_0477 at 555.756 kb on - strand at 555.783 kb on + strand at 555.790 kb on + strand at 555.806 kb on + strand at 555.806 kb on + strand at 555.857 kb on + strand, within Shewana3_0478 at 556.131 kb on + strand at 556.330 kb on - strand, within Shewana3_0479 at 556.335 kb on + strand, within Shewana3_0479 at 556.422 kb on + strand, within Shewana3_0479 at 556.801 kb on - strand, within Shewana3_0479 at 556.803 kb on + strand, within Shewana3_0479
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 553,855 - Shewana3_0476 0.31 -0.6 553,911 + Shewana3_0476 0.37 +0.1 553,926 + Shewana3_0476 0.39 +0.6 553,926 + Shewana3_0476 0.39 -0.1 553,934 - Shewana3_0476 0.40 +2.7 553,954 - Shewana3_0476 0.42 -1.0 553,983 + Shewana3_0476 0.45 -0.5 554,315 + Shewana3_0476 0.81 +2.5 554,315 + Shewana3_0476 0.81 -2.5 554,315 + Shewana3_0476 0.81 +0.3 554,323 - Shewana3_0476 0.82 -0.4 554,437 - -2.5 554,471 + +0.0 554,471 + -1.0 554,471 + +1.0 554,471 + +0.2 554,471 + -0.0 554,471 + +0.7 554,471 + -0.0 554,471 + +1.5 554,471 + -0.0 554,471 + +0.0 554,471 + +0.0 554,471 + +0.1 554,471 + +0.1 554,471 + +1.3 554,471 + +1.9 554,471 + +1.2 554,479 - -2.0 554,479 - -1.8 554,479 - -1.9 554,479 - -1.3 554,479 - -0.0 554,479 - -0.6 554,479 - -1.7 554,479 - -1.4 554,554 - -0.5 554,607 - +0.2 554,612 - -0.8 554,989 + Shewana3_0477 0.26 -0.6 555,087 - Shewana3_0477 0.35 +0.3 555,283 + Shewana3_0477 0.52 +1.2 555,312 + Shewana3_0477 0.55 +0.8 555,410 - Shewana3_0477 0.64 +0.0 555,510 - Shewana3_0477 0.73 -1.2 555,568 + Shewana3_0477 0.78 +0.2 555,585 + Shewana3_0477 0.79 -0.1 555,756 - -0.4 555,783 + -0.0 555,790 + +0.7 555,806 + +0.3 555,806 + -0.9 555,857 + Shewana3_0478 0.17 -0.3 556,131 + +0.8 556,330 - Shewana3_0479 0.16 -0.2 556,335 + Shewana3_0479 0.16 -0.1 556,422 + Shewana3_0479 0.24 -0.4 556,801 - Shewana3_0479 0.60 -0.2 556,803 + Shewana3_0479 0.61 -1.2
Or see this region's nucleotide sequence