Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ubiA and Shewana3_0471 are separated by 86 nucleotides Shewana3_0471 and Shewana3_0472 are separated by 67 nucleotides Shewana3_0472 and Shewana3_0473 are separated by 103 nucleotides Shewana3_0473 and Shewana3_0474 are separated by 373 nucleotides
Shewana3_0470: ubiA - 4-hydroxybenzoate octaprenyltransferase (RefSeq), at 547,026 to 547,886
ubiA
Shewana3_0471: Shewana3_0471 - hypothetical protein (RefSeq), at 547,973 to 548,398
_0471
Shewana3_0472: Shewana3_0472 - IS4 family transposase (RefSeq), at 548,466 to 550,079
_0472
Shewana3_0473: Shewana3_0473 - hypothetical protein (RefSeq), at 550,183 to 550,599
_0473
Shewana3_0474: Shewana3_0474 - 2-nitropropane dioxygenase, NPD (RefSeq), at 550,973 to 552,034
_0474
Position (kb) 548
549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 547.888 kb on - strand at 547.927 kb on + strand at 548.042 kb on - strand, within Shewana3_0471 at 548.069 kb on + strand, within Shewana3_0471 at 548.091 kb on - strand, within Shewana3_0471 at 548.128 kb on + strand, within Shewana3_0471 at 548.143 kb on - strand, within Shewana3_0471 at 548.206 kb on + strand, within Shewana3_0471 at 548.214 kb on + strand, within Shewana3_0471 at 548.214 kb on - strand, within Shewana3_0471 at 548.216 kb on + strand, within Shewana3_0471 at 548.224 kb on - strand, within Shewana3_0471 at 548.263 kb on - strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.356 kb on + strand at 548.364 kb on - strand at 550.175 kb on + strand at 550.288 kb on + strand, within Shewana3_0473 at 550.288 kb on + strand, within Shewana3_0473 at 550.288 kb on + strand, within Shewana3_0473 at 550.296 kb on - strand, within Shewana3_0473 at 550.349 kb on - strand, within Shewana3_0473 at 550.356 kb on - strand, within Shewana3_0473 at 550.391 kb on + strand, within Shewana3_0473 at 550.391 kb on + strand, within Shewana3_0473 at 550.399 kb on - strand, within Shewana3_0473 at 550.425 kb on - strand, within Shewana3_0473 at 550.433 kb on - strand, within Shewana3_0473 at 550.466 kb on - strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.480 kb on + strand, within Shewana3_0473 at 550.489 kb on - strand, within Shewana3_0473 at 550.515 kb on + strand, within Shewana3_0473 at 550.536 kb on + strand, within Shewana3_0473 at 550.544 kb on - strand, within Shewana3_0473 at 550.554 kb on - strand, within Shewana3_0473 at 550.597 kb on + strand at 550.597 kb on + strand at 550.605 kb on - strand at 550.623 kb on + strand at 550.806 kb on - strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.826 kb on + strand at 550.826 kb on + strand at 550.847 kb on - strand at 550.976 kb on - strand at 550.976 kb on - strand at 551.044 kb on + strand at 551.049 kb on + strand at 551.049 kb on + strand at 551.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 547,888 - +0.3 547,927 + -0.5 548,042 - Shewana3_0471 0.16 +0.4 548,069 + Shewana3_0471 0.23 -0.7 548,091 - Shewana3_0471 0.28 -0.0 548,128 + Shewana3_0471 0.36 +0.9 548,143 - Shewana3_0471 0.40 -0.5 548,206 + Shewana3_0471 0.55 -2.1 548,214 + Shewana3_0471 0.57 -1.0 548,214 - Shewana3_0471 0.57 -0.1 548,216 + Shewana3_0471 0.57 +0.3 548,224 - Shewana3_0471 0.59 +2.3 548,263 - Shewana3_0471 0.68 -0.2 548,307 + Shewana3_0471 0.78 -0.2 548,307 + Shewana3_0471 0.78 -0.3 548,307 + Shewana3_0471 0.78 -0.6 548,307 + Shewana3_0471 0.78 -0.4 548,307 + Shewana3_0471 0.78 -0.2 548,307 + Shewana3_0471 0.78 -1.1 548,356 + -0.3 548,364 - +1.3 550,175 + -2.3 550,288 + Shewana3_0473 0.25 +0.3 550,288 + Shewana3_0473 0.25 -0.2 550,288 + Shewana3_0473 0.25 +0.8 550,296 - Shewana3_0473 0.27 -0.4 550,349 - Shewana3_0473 0.40 +0.0 550,356 - Shewana3_0473 0.41 -1.2 550,391 + Shewana3_0473 0.50 -0.7 550,391 + Shewana3_0473 0.50 +0.7 550,399 - Shewana3_0473 0.52 -1.0 550,425 - Shewana3_0473 0.58 -1.2 550,433 - Shewana3_0473 0.60 -0.5 550,466 - Shewana3_0473 0.68 -2.5 550,470 + Shewana3_0473 0.69 -0.3 550,470 + Shewana3_0473 0.69 -2.8 550,470 + Shewana3_0473 0.69 -1.3 550,470 + Shewana3_0473 0.69 -1.4 550,471 + Shewana3_0473 0.69 -0.5 550,471 + Shewana3_0473 0.69 -1.1 550,471 + Shewana3_0473 0.69 -1.7 550,471 + Shewana3_0473 0.69 -1.1 550,479 - Shewana3_0473 0.71 -2.7 550,479 - Shewana3_0473 0.71 -1.4 550,479 - Shewana3_0473 0.71 -2.3 550,480 + Shewana3_0473 0.71 -0.9 550,489 - Shewana3_0473 0.73 -0.6 550,515 + Shewana3_0473 0.80 +0.8 550,536 + Shewana3_0473 0.85 -0.2 550,544 - Shewana3_0473 0.87 -1.5 550,554 - Shewana3_0473 0.89 -2.7 550,597 + -0.8 550,597 + +0.0 550,605 - -1.6 550,623 + -1.0 550,806 - -1.4 550,811 + -0.7 550,811 + -0.6 550,811 + -0.4 550,811 + -0.5 550,811 + +1.3 550,811 + +0.8 550,811 + -0.7 550,811 + -1.0 550,811 + -2.3 550,811 + -1.1 550,819 - -0.5 550,819 - -0.5 550,819 - +1.9 550,819 - -0.7 550,826 + +0.1 550,826 + -1.1 550,847 - +1.7 550,976 - -1.4 550,976 - +0.2 551,044 + -1.2 551,049 + +0.8 551,049 + +0.2 551,057 - -0.1
Or see this region's nucleotide sequence