Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0459 and Shewana3_0460 are separated by 193 nucleotides Shewana3_0460 and Shewana3_0461 are separated by 11 nucleotides Shewana3_0461 and Shewana3_0462 are separated by 47 nucleotides Shewana3_0462 and Shewana3_0463 are separated by 30 nucleotides
Shewana3_0459: Shewana3_0459 - protein of unknown function DUF853, NPT hydrolase putative (RefSeq), at 534,420 to 535,913
_0459
Shewana3_0460: Shewana3_0460 - hypothetical protein (RefSeq), at 536,107 to 536,340
_0460
Shewana3_0461: Shewana3_0461 - hypothetical protein (RefSeq), at 536,352 to 536,777
_0461
Shewana3_0462: Shewana3_0462 - protein of unknown function, zinc metallopeptidase putative (RefSeq), at 536,825 to 537,703
_0462
Shewana3_0463: Shewana3_0463 - NUDIX hydrolase (RefSeq), at 537,734 to 538,141
_0463
Position (kb) 536
537 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.443 kb on + strand, within Shewana3_0459 at 535.479 kb on + strand, within Shewana3_0459 at 535.502 kb on + strand, within Shewana3_0459 at 535.746 kb on - strand, within Shewana3_0459 at 535.907 kb on - strand at 535.961 kb on + strand at 535.969 kb on - strand at 535.969 kb on - strand at 536.050 kb on - strand at 536.051 kb on - strand at 536.056 kb on - strand at 536.154 kb on - strand, within Shewana3_0460 at 536.245 kb on + strand, within Shewana3_0460 at 536.253 kb on - strand, within Shewana3_0460 at 536.253 kb on - strand, within Shewana3_0460 at 536.316 kb on - strand, within Shewana3_0460 at 536.351 kb on + strand at 536.375 kb on + strand at 536.414 kb on - strand, within Shewana3_0461 at 536.813 kb on - strand at 536.881 kb on + strand at 536.881 kb on - strand at 537.015 kb on + strand, within Shewana3_0462 at 537.015 kb on + strand, within Shewana3_0462 at 537.207 kb on + strand, within Shewana3_0462 at 537.240 kb on + strand, within Shewana3_0462 at 537.356 kb on + strand, within Shewana3_0462 at 537.386 kb on - strand, within Shewana3_0462 at 537.508 kb on + strand, within Shewana3_0462 at 537.516 kb on - strand, within Shewana3_0462 at 537.601 kb on - strand, within Shewana3_0462 at 537.606 kb on + strand, within Shewana3_0462 at 537.607 kb on - strand, within Shewana3_0462 at 537.721 kb on - strand at 537.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 535,443 + Shewana3_0459 0.68 +0.5 535,479 + Shewana3_0459 0.71 +2.0 535,502 + Shewana3_0459 0.72 -0.6 535,746 - Shewana3_0459 0.89 +0.4 535,907 - -0.8 535,961 + +0.8 535,969 - -0.7 535,969 - +0.6 536,050 - -0.2 536,051 - -0.5 536,056 - +2.0 536,154 - Shewana3_0460 0.20 -0.4 536,245 + Shewana3_0460 0.59 -0.4 536,253 - Shewana3_0460 0.62 +2.4 536,253 - Shewana3_0460 0.62 +0.5 536,316 - Shewana3_0460 0.89 +0.8 536,351 + +0.2 536,375 + +0.1 536,414 - Shewana3_0461 0.15 -1.5 536,813 - -0.2 536,881 + +0.4 536,881 - -1.5 537,015 + Shewana3_0462 0.22 +0.5 537,015 + Shewana3_0462 0.22 -0.4 537,207 + Shewana3_0462 0.43 +0.8 537,240 + Shewana3_0462 0.47 -0.4 537,356 + Shewana3_0462 0.60 +0.8 537,386 - Shewana3_0462 0.64 -1.0 537,508 + Shewana3_0462 0.78 +2.2 537,516 - Shewana3_0462 0.79 -0.4 537,601 - Shewana3_0462 0.88 +0.4 537,606 + Shewana3_0462 0.89 -0.1 537,607 - Shewana3_0462 0.89 -2.2 537,721 - -1.1 537,765 + -1.5
Or see this region's nucleotide sequence