Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0419

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0418 and Shewana3_0419 are separated by 122 nucleotidesShewana3_0419 and Shewana3_0420 are separated by 307 nucleotides Shewana3_0418: Shewana3_0418 - type II secretion system protein (RefSeq), at 475,431 to 476,702 _0418 Shewana3_0419: Shewana3_0419 - type IV-A pilus assembly ATPase PilB (RefSeq), at 476,825 to 478,534 _0419 Shewana3_0420: Shewana3_0420 - O-antigen polymerase (RefSeq), at 478,842 to 480,278 _0420 Position (kb) 476 477 478 479Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 476.070 kb on + strand, within Shewana3_0418at 476.091 kb on + strand, within Shewana3_0418at 476.202 kb on + strand, within Shewana3_0418at 476.224 kb on + strand, within Shewana3_0418at 476.229 kb on + strand, within Shewana3_0418at 476.384 kb on + strand, within Shewana3_0418at 476.490 kb on - strand, within Shewana3_0418at 476.515 kb on + strand, within Shewana3_0418at 476.515 kb on + strand, within Shewana3_0418at 476.522 kb on + strand, within Shewana3_0418at 476.589 kb on + strandat 476.807 kb on - strandat 476.902 kb on + strandat 476.912 kb on + strandat 476.913 kb on + strandat 476.920 kb on - strandat 476.920 kb on - strandat 477.054 kb on + strand, within Shewana3_0419at 477.055 kb on + strand, within Shewana3_0419at 477.055 kb on - strand, within Shewana3_0419at 477.063 kb on - strand, within Shewana3_0419at 477.105 kb on - strand, within Shewana3_0419at 477.128 kb on + strand, within Shewana3_0419at 477.238 kb on + strand, within Shewana3_0419at 477.266 kb on - strand, within Shewana3_0419at 477.303 kb on + strand, within Shewana3_0419at 477.356 kb on - strand, within Shewana3_0419at 477.378 kb on + strand, within Shewana3_0419at 477.409 kb on - strand, within Shewana3_0419at 477.409 kb on - strand, within Shewana3_0419at 477.488 kb on - strand, within Shewana3_0419at 477.506 kb on + strand, within Shewana3_0419at 477.506 kb on + strand, within Shewana3_0419at 477.511 kb on + strand, within Shewana3_0419at 477.514 kb on - strand, within Shewana3_0419at 477.514 kb on - strand, within Shewana3_0419at 477.514 kb on - strand, within Shewana3_0419at 477.514 kb on - strand, within Shewana3_0419at 477.514 kb on - strand, within Shewana3_0419at 477.514 kb on - strand, within Shewana3_0419at 477.516 kb on + strand, within Shewana3_0419at 477.516 kb on + strand, within Shewana3_0419at 477.516 kb on + strand, within Shewana3_0419at 477.524 kb on - strand, within Shewana3_0419at 477.524 kb on - strand, within Shewana3_0419at 477.569 kb on + strand, within Shewana3_0419at 477.577 kb on - strand, within Shewana3_0419at 477.700 kb on + strand, within Shewana3_0419at 477.708 kb on - strand, within Shewana3_0419at 477.772 kb on - strand, within Shewana3_0419at 477.791 kb on - strand, within Shewana3_0419at 477.838 kb on - strand, within Shewana3_0419at 477.930 kb on - strand, within Shewana3_0419at 478.059 kb on + strand, within Shewana3_0419at 478.062 kb on - strand, within Shewana3_0419at 478.073 kb on + strand, within Shewana3_0419at 478.119 kb on + strand, within Shewana3_0419at 478.127 kb on - strand, within Shewana3_0419at 478.210 kb on + strand, within Shewana3_0419at 478.210 kb on + strand, within Shewana3_0419at 478.218 kb on - strand, within Shewana3_0419at 478.218 kb on - strand, within Shewana3_0419at 478.218 kb on - strand, within Shewana3_0419at 478.367 kb on - strandat 478.369 kb on + strandat 478.392 kb on + strandat 478.392 kb on + strandat 478.400 kb on - strandat 478.400 kb on - strandat 478.405 kb on - strandat 478.470 kb on + strandat 478.470 kb on + strandat 478.470 kb on + strandat 478.470 kb on + strandat 478.475 kb on + strandat 478.478 kb on - strandat 478.483 kb on - strandat 478.490 kb on - strandat 478.502 kb on + strandat 478.507 kb on - strandat 478.513 kb on + strandat 478.514 kb on + strandat 478.521 kb on - strandat 478.522 kb on - strandat 478.522 kb on - strandat 478.522 kb on - strandat 478.558 kb on - strandat 478.686 kb on + strandat 478.686 kb on + strandat 478.686 kb on + strandat 478.686 kb on + strandat 478.686 kb on + strandat 478.696 kb on + strandat 478.725 kb on - strandat 478.799 kb on - strandat 478.823 kb on + strandat 478.841 kb on - strandat 478.867 kb on - strandat 478.876 kb on + strandat 478.876 kb on + strandat 478.876 kb on + strandat 478.876 kb on + strandat 478.884 kb on - strandat 478.884 kb on - strandat 478.884 kb on - strandat 478.884 kb on - strandat 478.884 kb on - strandat 478.930 kb on - strandat 478.939 kb on + strandat 478.945 kb on + strandat 478.946 kb on + strandat 478.953 kb on - strandat 478.953 kb on - strandat 478.953 kb on - strandat 478.955 kb on + strandat 478.955 kb on + strandat 478.955 kb on + strandat 478.955 kb on + strandat 478.963 kb on + strandat 478.977 kb on - strandat 479.005 kb on + strand, within Shewana3_0420at 479.013 kb on - strand, within Shewana3_0420at 479.033 kb on + strand, within Shewana3_0420at 479.057 kb on + strand, within Shewana3_0420at 479.059 kb on + strand, within Shewana3_0420at 479.059 kb on + strand, within Shewana3_0420at 479.067 kb on - strand, within Shewana3_0420at 479.069 kb on + strand, within Shewana3_0420at 479.071 kb on + strand, within Shewana3_0420at 479.075 kb on - strand, within Shewana3_0420at 479.083 kb on + strand, within Shewana3_0420at 479.185 kb on - strand, within Shewana3_0420at 479.198 kb on - strand, within Shewana3_0420at 479.200 kb on - strand, within Shewana3_0420at 479.205 kb on + strand, within Shewana3_0420at 479.205 kb on + strand, within Shewana3_0420at 479.210 kb on + strand, within Shewana3_0420at 479.213 kb on - strand, within Shewana3_0420at 479.213 kb on - strand, within Shewana3_0420at 479.213 kb on - strand, within Shewana3_0420at 479.215 kb on + strand, within Shewana3_0420at 479.215 kb on + strand, within Shewana3_0420at 479.215 kb on + strand, within Shewana3_0420at 479.215 kb on + strand, within Shewana3_0420at 479.218 kb on - strand, within Shewana3_0420at 479.226 kb on + strand, within Shewana3_0420at 479.226 kb on + strand, within Shewana3_0420at 479.226 kb on - strand, within Shewana3_0420at 479.226 kb on - strand, within Shewana3_0420at 479.234 kb on - strand, within Shewana3_0420at 479.315 kb on - strand, within Shewana3_0420at 479.323 kb on - strand, within Shewana3_0420at 479.328 kb on + strand, within Shewana3_0420at 479.375 kb on + strand, within Shewana3_0420at 479.451 kb on + strand, within Shewana3_0420at 479.452 kb on + strand, within Shewana3_0420at 479.458 kb on + strand, within Shewana3_0420at 479.458 kb on + strand, within Shewana3_0420at 479.459 kb on - strand, within Shewana3_0420at 479.459 kb on - strand, within Shewana3_0420at 479.473 kb on + strand, within Shewana3_0420at 479.473 kb on + strand, within Shewana3_0420at 479.473 kb on + strand, within Shewana3_0420at 479.479 kb on - strand, within Shewana3_0420at 479.481 kb on - strand, within Shewana3_0420at 479.481 kb on - strand, within Shewana3_0420at 479.481 kb on - strand, within Shewana3_0420

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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476,070 + Shewana3_0418 0.50 -2.6
476,091 + Shewana3_0418 0.52 -1.8
476,202 + Shewana3_0418 0.61 -0.7
476,224 + Shewana3_0418 0.62 +1.5
476,229 + Shewana3_0418 0.63 -0.6
476,384 + Shewana3_0418 0.75 -0.6
476,490 - Shewana3_0418 0.83 +0.9
476,515 + Shewana3_0418 0.85 -0.8
476,515 + Shewana3_0418 0.85 -1.1
476,522 + Shewana3_0418 0.86 -0.7
476,589 + -0.8
476,807 - -0.3
476,902 + -1.9
476,912 + -1.2
476,913 + +0.9
476,920 - +0.6
476,920 - +0.2
477,054 + Shewana3_0419 0.13 -0.9
477,055 + Shewana3_0419 0.13 -0.6
477,055 - Shewana3_0419 0.13 -0.7
477,063 - Shewana3_0419 0.14 -0.1
477,105 - Shewana3_0419 0.16 -1.9
477,128 + Shewana3_0419 0.18 +0.2
477,238 + Shewana3_0419 0.24 +1.7
477,266 - Shewana3_0419 0.26 -1.3
477,303 + Shewana3_0419 0.28 +0.0
477,356 - Shewana3_0419 0.31 -0.1
477,378 + Shewana3_0419 0.32 -1.6
477,409 - Shewana3_0419 0.34 +0.2
477,409 - Shewana3_0419 0.34 +0.0
477,488 - Shewana3_0419 0.39 +1.1
477,506 + Shewana3_0419 0.40 -0.3
477,506 + Shewana3_0419 0.40 -0.1
477,511 + Shewana3_0419 0.40 -1.4
477,514 - Shewana3_0419 0.40 -0.1
477,514 - Shewana3_0419 0.40 -0.8
477,514 - Shewana3_0419 0.40 +0.3
477,514 - Shewana3_0419 0.40 +0.4
477,514 - Shewana3_0419 0.40 +0.3
477,514 - Shewana3_0419 0.40 +0.1
477,516 + Shewana3_0419 0.40 +2.5
477,516 + Shewana3_0419 0.40 -0.9
477,516 + Shewana3_0419 0.40 -0.6
477,524 - Shewana3_0419 0.41 -0.2
477,524 - Shewana3_0419 0.41 +1.5
477,569 + Shewana3_0419 0.44 -1.1
477,577 - Shewana3_0419 0.44 +0.7
477,700 + Shewana3_0419 0.51 -0.0
477,708 - Shewana3_0419 0.52 +0.8
477,772 - Shewana3_0419 0.55 +1.5
477,791 - Shewana3_0419 0.56 +1.7
477,838 - Shewana3_0419 0.59 +0.8
477,930 - Shewana3_0419 0.65 -0.1
478,059 + Shewana3_0419 0.72 +0.9
478,062 - Shewana3_0419 0.72 +1.8
478,073 + Shewana3_0419 0.73 -1.3
478,119 + Shewana3_0419 0.76 +4.5
478,127 - Shewana3_0419 0.76 +0.1
478,210 + Shewana3_0419 0.81 -2.1
478,210 + Shewana3_0419 0.81 -3.1
478,218 - Shewana3_0419 0.81 +0.0
478,218 - Shewana3_0419 0.81 -0.3
478,218 - Shewana3_0419 0.81 -0.3
478,367 - -1.1
478,369 + -0.5
478,392 + -1.4
478,392 + -1.2
478,400 - +0.3
478,400 - +0.4
478,405 - -0.8
478,470 + -0.3
478,470 + -2.5
478,470 + -1.6
478,470 + -0.2
478,475 + +0.6
478,478 - +0.7
478,483 - -0.0
478,490 - +0.9
478,502 + +0.2
478,507 - +0.5
478,513 + -2.2
478,514 + -2.2
478,521 - -2.4
478,522 - -1.8
478,522 - -0.1
478,522 - +0.3
478,558 - +1.6
478,686 + +0.3
478,686 + -2.0
478,686 + -0.8
478,686 + +0.2
478,686 + +0.4
478,696 + -0.7
478,725 - -2.8
478,799 - -0.8
478,823 + +0.1
478,841 - -1.3
478,867 - -0.8
478,876 + -0.8
478,876 + +0.6
478,876 + +1.2
478,876 + +1.2
478,884 - -1.2
478,884 - -0.3
478,884 - +0.9
478,884 - +1.6
478,884 - -0.6
478,930 - -0.5
478,939 + +1.1
478,945 + +0.7
478,946 + -0.5
478,953 - -2.8
478,953 - +0.9
478,953 - -0.8
478,955 + -0.5
478,955 + -0.5
478,955 + +0.4
478,955 + +0.5
478,963 + +0.1
478,977 - -3.3
479,005 + Shewana3_0420 0.11 -0.7
479,013 - Shewana3_0420 0.12 -0.5
479,033 + Shewana3_0420 0.13 -1.0
479,057 + Shewana3_0420 0.15 -1.1
479,059 + Shewana3_0420 0.15 -0.1
479,059 + Shewana3_0420 0.15 +0.1
479,067 - Shewana3_0420 0.16 -2.2
479,069 + Shewana3_0420 0.16 +0.0
479,071 + Shewana3_0420 0.16 -0.8
479,075 - Shewana3_0420 0.16 -3.1
479,083 + Shewana3_0420 0.17 -0.3
479,185 - Shewana3_0420 0.24 +2.5
479,198 - Shewana3_0420 0.25 -0.6
479,200 - Shewana3_0420 0.25 -0.7
479,205 + Shewana3_0420 0.25 +0.2
479,205 + Shewana3_0420 0.25 -2.9
479,210 + Shewana3_0420 0.26 -0.4
479,213 - Shewana3_0420 0.26 -0.1
479,213 - Shewana3_0420 0.26 -2.2
479,213 - Shewana3_0420 0.26 -1.5
479,215 + Shewana3_0420 0.26 +0.4
479,215 + Shewana3_0420 0.26 -0.2
479,215 + Shewana3_0420 0.26 -0.7
479,215 + Shewana3_0420 0.26 -0.8
479,218 - Shewana3_0420 0.26 -1.3
479,226 + Shewana3_0420 0.27 -0.4
479,226 + Shewana3_0420 0.27 +0.0
479,226 - Shewana3_0420 0.27 -0.6
479,226 - Shewana3_0420 0.27 -0.4
479,234 - Shewana3_0420 0.27 -0.6
479,315 - Shewana3_0420 0.33 -3.3
479,323 - Shewana3_0420 0.33 -2.3
479,328 + Shewana3_0420 0.34 -1.5
479,375 + Shewana3_0420 0.37 -0.1
479,451 + Shewana3_0420 0.42 -0.1
479,452 + Shewana3_0420 0.42 +1.4
479,458 + Shewana3_0420 0.43 +0.7
479,458 + Shewana3_0420 0.43 -0.3
479,459 - Shewana3_0420 0.43 -0.5
479,459 - Shewana3_0420 0.43 -0.4
479,473 + Shewana3_0420 0.44 -1.3
479,473 + Shewana3_0420 0.44 -0.2
479,473 + Shewana3_0420 0.44 -0.3
479,479 - Shewana3_0420 0.44 -0.5
479,481 - Shewana3_0420 0.44 -2.1
479,481 - Shewana3_0420 0.44 -2.0
479,481 - Shewana3_0420 0.44 -2.5

Or see this region's nucleotide sequence