Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0399 and prmA are separated by 174 nucleotides prmA and Shewana3_0401 are separated by 442 nucleotides
Shewana3_0399: Shewana3_0399 - nifR3 family TIM-barrel protein (RefSeq), at 457,826 to 458,794
_0399
Shewana3_0400: prmA - ribosomal protein L11 methyltransferase (RefSeq), at 458,969 to 459,850
prmA
Shewana3_0401: Shewana3_0401 - fumarate reductase cytochrome b-556 subunit (RefSeq), at 460,293 to 461,018
_0401
Position (kb) 458
459
460 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 458.191 kb on - strand, within Shewana3_0399 at 458.368 kb on - strand, within Shewana3_0399 at 458.463 kb on - strand, within Shewana3_0399 at 458.543 kb on - strand, within Shewana3_0399 at 458.692 kb on - strand, within Shewana3_0399 at 458.789 kb on - strand at 458.819 kb on + strand at 458.822 kb on - strand at 458.822 kb on - strand at 458.822 kb on - strand at 458.968 kb on - strand at 459.077 kb on - strand, within prmA at 459.143 kb on - strand, within prmA at 459.390 kb on - strand, within prmA at 459.390 kb on - strand, within prmA at 459.390 kb on - strand, within prmA at 459.576 kb on + strand, within prmA at 459.666 kb on + strand, within prmA at 459.751 kb on + strand, within prmA at 459.759 kb on - strand, within prmA at 459.759 kb on - strand, within prmA at 459.851 kb on + strand at 459.858 kb on + strand at 460.045 kb on + strand at 460.208 kb on - strand at 460.344 kb on - strand at 460.368 kb on + strand, within Shewana3_0401 at 460.387 kb on + strand, within Shewana3_0401 at 460.395 kb on - strand, within Shewana3_0401 at 460.395 kb on - strand, within Shewana3_0401 at 460.402 kb on + strand, within Shewana3_0401 at 460.501 kb on + strand, within Shewana3_0401 at 460.514 kb on - strand, within Shewana3_0401 at 460.514 kb on - strand, within Shewana3_0401 at 460.650 kb on - strand, within Shewana3_0401 at 460.729 kb on - strand, within Shewana3_0401 at 460.799 kb on + strand, within Shewana3_0401 at 460.809 kb on - strand, within Shewana3_0401
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 458,191 - Shewana3_0399 0.38 +3.1 458,368 - Shewana3_0399 0.56 +3.4 458,463 - Shewana3_0399 0.66 +3.6 458,543 - Shewana3_0399 0.74 +4.0 458,692 - Shewana3_0399 0.89 +3.5 458,789 - +3.5 458,819 + +2.1 458,822 - +3.4 458,822 - +4.4 458,822 - +3.6 458,968 - +1.0 459,077 - prmA Shewana3_0400 0.12 +1.2 459,143 - prmA Shewana3_0400 0.20 +0.5 459,390 - prmA Shewana3_0400 0.48 +0.6 459,390 - prmA Shewana3_0400 0.48 +1.4 459,390 - prmA Shewana3_0400 0.48 +1.5 459,576 + prmA Shewana3_0400 0.69 -0.7 459,666 + prmA Shewana3_0400 0.79 +0.7 459,751 + prmA Shewana3_0400 0.89 +0.8 459,759 - prmA Shewana3_0400 0.90 -0.3 459,759 - prmA Shewana3_0400 0.90 -0.3 459,851 + +1.1 459,858 + -0.3 460,045 + -4.3 460,208 - -1.4 460,344 - -2.7 460,368 + Shewana3_0401 0.10 +1.8 460,387 + Shewana3_0401 0.13 +0.4 460,395 - Shewana3_0401 0.14 -0.2 460,395 - Shewana3_0401 0.14 +0.6 460,402 + Shewana3_0401 0.15 -0.3 460,501 + Shewana3_0401 0.29 +0.0 460,514 - Shewana3_0401 0.30 -1.4 460,514 - Shewana3_0401 0.30 -1.5 460,650 - Shewana3_0401 0.49 +0.6 460,729 - Shewana3_0401 0.60 -1.4 460,799 + Shewana3_0401 0.70 +1.3 460,809 - Shewana3_0401 0.71 -1.3
Or see this region's nucleotide sequence