Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0329 and Shewana3_0330 are separated by 96 nucleotides Shewana3_0330 and Shewana3_0331 are separated by 4 nucleotides Shewana3_0331 and Shewana3_0332 are separated by 0 nucleotides
Shewana3_0329: Shewana3_0329 - 3-oxoacyl-(acyl carrier protein) synthase I (RefSeq), at 363,111 to 364,328
_0329
Shewana3_0330: Shewana3_0330 - hypothetical protein (RefSeq), at 364,425 to 365,159
_0330
Shewana3_0331: Shewana3_0331 - monooxygenase, FAD-binding (RefSeq), at 365,164 to 366,471
_0331
Shewana3_0332: Shewana3_0332 - hypothetical protein (RefSeq), at 366,472 to 368,991
_0332
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2 at 364.226 kb on - strand at 364.254 kb on + strand at 364.262 kb on - strand at 364.262 kb on - strand at 364.262 kb on - strand at 364.263 kb on - strand at 364.350 kb on + strand at 364.358 kb on - strand at 364.704 kb on - strand, within Shewana3_0330 at 364.773 kb on - strand, within Shewana3_0330 at 364.784 kb on + strand, within Shewana3_0330 at 364.789 kb on + strand, within Shewana3_0330 at 364.789 kb on + strand, within Shewana3_0330 at 364.859 kb on + strand, within Shewana3_0330 at 364.859 kb on + strand, within Shewana3_0330 at 364.859 kb on + strand, within Shewana3_0330 at 364.867 kb on - strand, within Shewana3_0330 at 364.867 kb on - strand, within Shewana3_0330 at 364.867 kb on - strand, within Shewana3_0330 at 365.009 kb on + strand, within Shewana3_0330 at 365.017 kb on - strand, within Shewana3_0330 at 365.147 kb on + strand at 365.155 kb on - strand at 365.155 kb on - strand at 365.155 kb on - strand at 365.155 kb on - strand at 365.162 kb on + strand at 365.410 kb on - strand, within Shewana3_0331 at 365.424 kb on + strand, within Shewana3_0331 at 365.439 kb on - strand, within Shewana3_0331 at 365.454 kb on - strand, within Shewana3_0331 at 365.611 kb on + strand, within Shewana3_0331 at 365.629 kb on + strand, within Shewana3_0331 at 365.645 kb on + strand, within Shewana3_0331 at 365.663 kb on - strand, within Shewana3_0331 at 365.799 kb on - strand, within Shewana3_0331 at 365.814 kb on + strand, within Shewana3_0331 at 365.878 kb on + strand, within Shewana3_0331 at 366.017 kb on + strand, within Shewana3_0331 at 366.017 kb on + strand, within Shewana3_0331 at 366.025 kb on - strand, within Shewana3_0331 at 366.150 kb on + strand, within Shewana3_0331 at 366.193 kb on - strand, within Shewana3_0331 at 366.449 kb on - strand at 366.561 kb on + strand at 366.612 kb on + strand at 366.627 kb on + strand at 366.628 kb on + strand at 366.656 kb on + strand at 366.666 kb on - strand at 366.769 kb on + strand, within Shewana3_0332 at 366.769 kb on + strand, within Shewana3_0332 at 366.808 kb on + strand, within Shewana3_0332 at 366.808 kb on + strand, within Shewana3_0332 at 366.813 kb on - strand, within Shewana3_0332 at 366.846 kb on - strand, within Shewana3_0332 at 366.927 kb on + strand, within Shewana3_0332 at 366.957 kb on - strand, within Shewana3_0332 at 367.029 kb on - strand, within Shewana3_0332 at 367.044 kb on + strand, within Shewana3_0332 at 367.049 kb on - strand, within Shewana3_0332 at 367.049 kb on - strand, within Shewana3_0332 at 367.049 kb on - strand, within Shewana3_0332 at 367.142 kb on - strand, within Shewana3_0332 at 367.207 kb on - strand, within Shewana3_0332 at 367.239 kb on + strand, within Shewana3_0332 at 367.246 kb on + strand, within Shewana3_0332 at 367.402 kb on + strand, within Shewana3_0332
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 364,226 - +0.5 364,254 + -1.5 364,262 - +0.2 364,262 - -0.6 364,262 - +0.7 364,263 - -0.3 364,350 + -0.3 364,358 - -0.6 364,704 - Shewana3_0330 0.38 +0.1 364,773 - Shewana3_0330 0.47 -0.8 364,784 + Shewana3_0330 0.49 -0.4 364,789 + Shewana3_0330 0.50 +0.3 364,789 + Shewana3_0330 0.50 +1.8 364,859 + Shewana3_0330 0.59 -0.3 364,859 + Shewana3_0330 0.59 +0.2 364,859 + Shewana3_0330 0.59 -0.8 364,867 - Shewana3_0330 0.60 +1.2 364,867 - Shewana3_0330 0.60 +1.0 364,867 - Shewana3_0330 0.60 -0.1 365,009 + Shewana3_0330 0.79 -0.6 365,017 - Shewana3_0330 0.81 +0.6 365,147 + -0.9 365,155 - -0.5 365,155 - -0.4 365,155 - +0.5 365,155 - -0.4 365,162 + -0.3 365,410 - Shewana3_0331 0.19 -0.5 365,424 + Shewana3_0331 0.20 -0.1 365,439 - Shewana3_0331 0.21 -0.7 365,454 - Shewana3_0331 0.22 -0.5 365,611 + Shewana3_0331 0.34 -0.4 365,629 + Shewana3_0331 0.36 +0.4 365,645 + Shewana3_0331 0.37 +0.4 365,663 - Shewana3_0331 0.38 +0.5 365,799 - Shewana3_0331 0.49 -0.3 365,814 + Shewana3_0331 0.50 -0.5 365,878 + Shewana3_0331 0.55 +1.0 366,017 + Shewana3_0331 0.65 +1.0 366,017 + Shewana3_0331 0.65 -0.0 366,025 - Shewana3_0331 0.66 +0.4 366,150 + Shewana3_0331 0.75 +1.1 366,193 - Shewana3_0331 0.79 +0.6 366,449 - -1.9 366,561 + +0.9 366,612 + -0.7 366,627 + -0.9 366,628 + -0.4 366,656 + -0.4 366,666 - +0.3 366,769 + Shewana3_0332 0.12 -0.7 366,769 + Shewana3_0332 0.12 -0.3 366,808 + Shewana3_0332 0.13 +0.7 366,808 + Shewana3_0332 0.13 -0.9 366,813 - Shewana3_0332 0.14 -1.0 366,846 - Shewana3_0332 0.15 -2.0 366,927 + Shewana3_0332 0.18 -0.5 366,957 - Shewana3_0332 0.19 -0.2 367,029 - Shewana3_0332 0.22 -1.1 367,044 + Shewana3_0332 0.23 -0.1 367,049 - Shewana3_0332 0.23 +0.5 367,049 - Shewana3_0332 0.23 -0.4 367,049 - Shewana3_0332 0.23 +1.6 367,142 - Shewana3_0332 0.27 +0.4 367,207 - Shewana3_0332 0.29 -0.7 367,239 + Shewana3_0332 0.30 -1.4 367,246 + Shewana3_0332 0.31 -0.4 367,402 + Shewana3_0332 0.37 -0.9
Or see this region's nucleotide sequence