Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0270

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0269 and Shewana3_0270 are separated by 117 nucleotidesShewana3_0270 and Shewana3_0271 are separated by 36 nucleotidesShewana3_0271 and Shewana3_0272 are separated by 81 nucleotides Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267 _0269 Shewana3_0270: Shewana3_0270 - MOSC domain-containing protein (RefSeq), at 304,385 to 305,080 _0270 Shewana3_0271: Shewana3_0271 - hypothetical protein (RefSeq), at 305,117 to 305,473 _0271 Shewana3_0272: Shewana3_0272 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 305,555 to 307,471 _0272 Position (kb) 304 305 306Strain fitness (log2 ratio) -2 -1 0 1 2at 303.385 kb on + strand, within Shewana3_0269at 303.385 kb on + strand, within Shewana3_0269at 303.393 kb on - strand, within Shewana3_0269at 303.505 kb on - strand, within Shewana3_0269at 303.535 kb on + strand, within Shewana3_0269at 303.554 kb on - strand, within Shewana3_0269at 303.565 kb on - strand, within Shewana3_0269at 303.668 kb on - strand, within Shewana3_0269at 303.695 kb on + strand, within Shewana3_0269at 303.722 kb on - strand, within Shewana3_0269at 303.765 kb on + strand, within Shewana3_0269at 303.765 kb on + strand, within Shewana3_0269at 303.773 kb on - strand, within Shewana3_0269at 303.929 kb on + strand, within Shewana3_0269at 303.938 kb on - strand, within Shewana3_0269at 303.969 kb on + strand, within Shewana3_0269at 304.149 kb on + strandat 304.149 kb on + strandat 304.157 kb on - strandat 304.272 kb on - strandat 304.352 kb on + strandat 304.536 kb on + strand, within Shewana3_0270at 304.603 kb on - strand, within Shewana3_0270at 304.795 kb on - strand, within Shewana3_0270at 304.804 kb on + strand, within Shewana3_0270at 304.880 kb on - strand, within Shewana3_0270at 304.880 kb on - strand, within Shewana3_0270at 305.104 kb on - strandat 305.437 kb on - strand, within Shewana3_0271at 305.554 kb on - strandat 305.608 kb on + strandat 305.688 kb on - strandat 305.758 kb on + strand, within Shewana3_0272at 305.758 kb on + strand, within Shewana3_0272at 305.837 kb on + strand, within Shewana3_0272at 305.845 kb on - strand, within Shewana3_0272at 305.845 kb on - strand, within Shewana3_0272at 305.845 kb on - strand, within Shewana3_0272at 305.929 kb on + strand, within Shewana3_0272at 305.974 kb on - strand, within Shewana3_0272

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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303,385 + Shewana3_0269 0.39 -0.3
303,385 + Shewana3_0269 0.39 +0.3
303,393 - Shewana3_0269 0.40 -0.6
303,505 - Shewana3_0269 0.48 -1.0
303,535 + Shewana3_0269 0.50 -0.1
303,554 - Shewana3_0269 0.51 -1.0
303,565 - Shewana3_0269 0.52 -0.7
303,668 - Shewana3_0269 0.59 -1.1
303,695 + Shewana3_0269 0.61 -0.4
303,722 - Shewana3_0269 0.63 -0.2
303,765 + Shewana3_0269 0.66 -0.1
303,765 + Shewana3_0269 0.66 -1.2
303,773 - Shewana3_0269 0.66 +1.9
303,929 + Shewana3_0269 0.77 -0.7
303,938 - Shewana3_0269 0.77 +1.0
303,969 + Shewana3_0269 0.79 +0.8
304,149 + -0.9
304,149 + -2.6
304,157 - +1.0
304,272 - -1.1
304,352 + -0.7
304,536 + Shewana3_0270 0.22 -1.0
304,603 - Shewana3_0270 0.31 -2.6
304,795 - Shewana3_0270 0.59 +1.0
304,804 + Shewana3_0270 0.60 -0.7
304,880 - Shewana3_0270 0.71 -0.5
304,880 - Shewana3_0270 0.71 -1.4
305,104 - -0.9
305,437 - Shewana3_0271 0.90 -1.8
305,554 - +0.5
305,608 + -0.6
305,688 - +0.1
305,758 + Shewana3_0272 0.11 -0.7
305,758 + Shewana3_0272 0.11 -0.7
305,837 + Shewana3_0272 0.15 +1.3
305,845 - Shewana3_0272 0.15 +0.6
305,845 - Shewana3_0272 0.15 -0.2
305,845 - Shewana3_0272 0.15 +0.9
305,929 + Shewana3_0272 0.20 -0.6
305,974 - Shewana3_0272 0.22 +1.8

Or see this region's nucleotide sequence