Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0111 and Shewana3_0112 are separated by 117 nucleotides Shewana3_0112 and Shewana3_0113 are separated by 385 nucleotides
Shewana3_0111: Shewana3_0111 - peptidase M48, Ste24p (RefSeq), at 127,143 to 128,486
_0111
Shewana3_0112: Shewana3_0112 - hypothetical protein (RefSeq), at 128,604 to 129,218
_0112
Shewana3_0113: Shewana3_0113 - hypothetical protein (RefSeq), at 129,604 to 130,224
_0113
Position (kb) 128
129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 127.666 kb on - strand, within Shewana3_0111 at 127.721 kb on + strand, within Shewana3_0111 at 127.756 kb on - strand, within Shewana3_0111 at 127.767 kb on - strand, within Shewana3_0111 at 127.807 kb on - strand, within Shewana3_0111 at 127.855 kb on - strand, within Shewana3_0111 at 127.892 kb on - strand, within Shewana3_0111 at 127.947 kb on + strand, within Shewana3_0111 at 127.947 kb on + strand, within Shewana3_0111 at 127.947 kb on + strand, within Shewana3_0111 at 127.947 kb on + strand, within Shewana3_0111 at 127.986 kb on + strand, within Shewana3_0111 at 127.986 kb on + strand, within Shewana3_0111 at 128.041 kb on - strand, within Shewana3_0111 at 128.041 kb on - strand, within Shewana3_0111 at 128.097 kb on + strand, within Shewana3_0111 at 128.105 kb on - strand, within Shewana3_0111 at 128.110 kb on - strand, within Shewana3_0111 at 128.379 kb on - strand at 128.609 kb on - strand at 128.769 kb on - strand, within Shewana3_0112 at 128.785 kb on + strand, within Shewana3_0112 at 128.807 kb on - strand, within Shewana3_0112 at 128.836 kb on + strand, within Shewana3_0112 at 128.836 kb on + strand, within Shewana3_0112 at 128.844 kb on - strand, within Shewana3_0112 at 128.857 kb on + strand, within Shewana3_0112 at 128.873 kb on - strand, within Shewana3_0112 at 128.970 kb on + strand, within Shewana3_0112 at 128.994 kb on + strand, within Shewana3_0112 at 129.029 kb on + strand, within Shewana3_0112 at 129.040 kb on + strand, within Shewana3_0112 at 129.141 kb on - strand, within Shewana3_0112 at 129.190 kb on + strand at 129.235 kb on + strand at 129.343 kb on + strand at 129.420 kb on - strand at 129.420 kb on - strand at 129.512 kb on + strand at 129.534 kb on + strand at 129.539 kb on + strand at 129.580 kb on + strand at 129.663 kb on + strand at 129.671 kb on - strand, within Shewana3_0113 at 129.816 kb on + strand, within Shewana3_0113 at 129.957 kb on + strand, within Shewana3_0113 at 129.965 kb on - strand, within Shewana3_0113 at 130.117 kb on + strand, within Shewana3_0113
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 127,666 - Shewana3_0111 0.39 +0.0 127,721 + Shewana3_0111 0.43 -3.0 127,756 - Shewana3_0111 0.46 +1.6 127,767 - Shewana3_0111 0.46 -0.4 127,807 - Shewana3_0111 0.49 -0.1 127,855 - Shewana3_0111 0.53 +1.7 127,892 - Shewana3_0111 0.56 +0.7 127,947 + Shewana3_0111 0.60 -1.7 127,947 + Shewana3_0111 0.60 -0.8 127,947 + Shewana3_0111 0.60 -1.1 127,947 + Shewana3_0111 0.60 -0.5 127,986 + Shewana3_0111 0.63 -0.9 127,986 + Shewana3_0111 0.63 -0.1 128,041 - Shewana3_0111 0.67 -0.1 128,041 - Shewana3_0111 0.67 -0.2 128,097 + Shewana3_0111 0.71 -0.5 128,105 - Shewana3_0111 0.72 +0.2 128,110 - Shewana3_0111 0.72 +0.6 128,379 - -0.9 128,609 - +1.2 128,769 - Shewana3_0112 0.27 -0.2 128,785 + Shewana3_0112 0.29 -0.4 128,807 - Shewana3_0112 0.33 -0.6 128,836 + Shewana3_0112 0.38 +2.6 128,836 + Shewana3_0112 0.38 -1.4 128,844 - Shewana3_0112 0.39 -1.2 128,857 + Shewana3_0112 0.41 +1.2 128,873 - Shewana3_0112 0.44 +0.6 128,970 + Shewana3_0112 0.60 -0.4 128,994 + Shewana3_0112 0.63 -0.1 129,029 + Shewana3_0112 0.69 +1.5 129,040 + Shewana3_0112 0.71 +0.7 129,141 - Shewana3_0112 0.87 -0.4 129,190 + +0.9 129,235 + -0.2 129,343 + +0.3 129,420 - -0.4 129,420 - -0.6 129,512 + +0.3 129,534 + +0.2 129,539 + -0.5 129,580 + +0.1 129,663 + -0.4 129,671 - Shewana3_0113 0.11 +0.1 129,816 + Shewana3_0113 0.34 +1.2 129,957 + Shewana3_0113 0.57 +1.6 129,965 - Shewana3_0113 0.58 -0.1 130,117 + Shewana3_0113 0.83 -0.0
Or see this region's nucleotide sequence