Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0081 and Shewana3_0082 are separated by 107 nucleotides Shewana3_0082 and Shewana3_0083 are separated by 118 nucleotides Shewana3_0083 and Shewana3_0084 are separated by 20 nucleotides Shewana3_0084 and Shewana3_0085 are separated by 59 nucleotides Shewana3_0085 and Shewana3_0086 are separated by 160 nucleotides
Shewana3_0081: Shewana3_0081 - MORN repeat-containing protein (RefSeq), at 94,414 to 96,903
_0081
Shewana3_0082: Shewana3_0082 - thioesterase superfamily protein (RefSeq), at 97,011 to 97,421
_0082
Shewana3_0083: Shewana3_0083 - HPP family protein (RefSeq), at 97,540 to 98,088
_0083
Shewana3_0084: Shewana3_0084 - hypothetical protein (RefSeq), at 98,109 to 98,372
_0084
Shewana3_0085: Shewana3_0085 - thioesterase superfamily protein (RefSeq), at 98,432 to 98,896
_0085
Shewana3_0086: Shewana3_0086 - MerR family transcriptional regulator (RefSeq), at 99,057 to 99,410
_0086
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 96.586 kb on + strand, within Shewana3_0081 at 96.676 kb on - strand at 96.836 kb on - strand at 96.836 kb on - strand at 96.975 kb on + strand at 96.983 kb on - strand at 97.065 kb on + strand, within Shewana3_0082 at 97.111 kb on - strand, within Shewana3_0082 at 97.267 kb on + strand, within Shewana3_0082 at 97.341 kb on + strand, within Shewana3_0082 at 97.346 kb on - strand, within Shewana3_0082 at 97.392 kb on - strand at 97.393 kb on + strand at 97.406 kb on + strand at 97.424 kb on - strand at 97.575 kb on + strand at 97.575 kb on + strand at 97.688 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.734 kb on - strand, within Shewana3_0083 at 97.789 kb on + strand, within Shewana3_0083 at 97.948 kb on + strand, within Shewana3_0083 at 98.072 kb on - strand at 98.175 kb on + strand, within Shewana3_0084 at 98.175 kb on + strand, within Shewana3_0084 at 98.504 kb on - strand, within Shewana3_0085 at 98.507 kb on + strand, within Shewana3_0085 at 98.586 kb on - strand, within Shewana3_0085 at 98.694 kb on + strand, within Shewana3_0085 at 98.830 kb on + strand, within Shewana3_0085 at 98.832 kb on + strand, within Shewana3_0085 at 98.837 kb on - strand, within Shewana3_0085 at 98.840 kb on - strand, within Shewana3_0085 at 98.990 kb on + strand at 99.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 96,586 + Shewana3_0081 0.87 -3.4 96,676 - -0.7 96,836 - -1.6 96,836 - -2.3 96,975 + -2.7 96,983 - +0.4 97,065 + Shewana3_0082 0.13 +0.1 97,111 - Shewana3_0082 0.24 -0.8 97,267 + Shewana3_0082 0.62 +0.3 97,341 + Shewana3_0082 0.80 +1.6 97,346 - Shewana3_0082 0.82 -1.3 97,392 - -1.0 97,393 + +0.4 97,406 + +0.1 97,424 - -0.6 97,575 + -0.4 97,575 + -0.3 97,688 + Shewana3_0083 0.27 -0.2 97,726 + Shewana3_0083 0.34 +0.3 97,726 + Shewana3_0083 0.34 +0.4 97,734 - Shewana3_0083 0.35 -3.0 97,789 + Shewana3_0083 0.45 -0.1 97,948 + Shewana3_0083 0.74 +0.4 98,072 - -0.4 98,175 + Shewana3_0084 0.25 -1.0 98,175 + Shewana3_0084 0.25 -0.3 98,504 - Shewana3_0085 0.15 -0.8 98,507 + Shewana3_0085 0.16 -0.8 98,586 - Shewana3_0085 0.33 -0.8 98,694 + Shewana3_0085 0.56 -1.0 98,830 + Shewana3_0085 0.86 -2.1 98,832 + Shewana3_0085 0.86 -0.1 98,837 - Shewana3_0085 0.87 -0.5 98,840 - Shewana3_0085 0.88 -1.9 98,990 + +0.9 99,008 - -0.3
Or see this region's nucleotide sequence