Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0072 and Shewana3_0073 are separated by 3 nucleotides Shewana3_0073 and Shewana3_0074 are separated by 49 nucleotides Shewana3_0074 and Shewana3_0075 are separated by 88 nucleotides Shewana3_0075 and Shewana3_0076 are separated by 3 nucleotides
Shewana3_0072: Shewana3_0072 - transcriptional regulator (RefSeq), at 84,734 to 85,777
_0072
Shewana3_0073: Shewana3_0073 - hypothetical protein (RefSeq), at 85,781 to 86,041
_0073
Shewana3_0074: Shewana3_0074 - transport protein, putative (RefSeq), at 86,091 to 87,230
_0074
Shewana3_0075: Shewana3_0075 - ABC transporter related (RefSeq), at 87,319 to 88,053
_0075
Shewana3_0076: Shewana3_0076 - TAP domain-containing protein (RefSeq), at 88,057 to 89,676
_0076
Position (kb) 86
87
88 Strain fitness (log2 ratio) -2
-1
0
1 at 85.194 kb on + strand, within Shewana3_0072 at 85.227 kb on - strand, within Shewana3_0072 at 85.268 kb on - strand, within Shewana3_0072 at 85.272 kb on + strand, within Shewana3_0072 at 85.304 kb on + strand, within Shewana3_0072 at 85.380 kb on + strand, within Shewana3_0072 at 85.425 kb on - strand, within Shewana3_0072 at 85.517 kb on - strand, within Shewana3_0072 at 85.633 kb on - strand, within Shewana3_0072 at 85.689 kb on + strand at 85.710 kb on - strand at 85.769 kb on - strand at 86.004 kb on - strand, within Shewana3_0073 at 86.059 kb on - strand at 86.340 kb on + strand, within Shewana3_0074 at 86.348 kb on - strand, within Shewana3_0074 at 86.358 kb on - strand, within Shewana3_0074 at 86.359 kb on - strand, within Shewana3_0074 at 86.438 kb on - strand, within Shewana3_0074 at 86.469 kb on + strand, within Shewana3_0074 at 86.501 kb on - strand, within Shewana3_0074 at 86.501 kb on - strand, within Shewana3_0074 at 86.528 kb on - strand, within Shewana3_0074 at 86.530 kb on + strand, within Shewana3_0074 at 86.540 kb on + strand, within Shewana3_0074 at 86.646 kb on + strand, within Shewana3_0074 at 86.683 kb on + strand, within Shewana3_0074 at 86.733 kb on - strand, within Shewana3_0074 at 86.794 kb on - strand, within Shewana3_0074 at 86.815 kb on - strand, within Shewana3_0074 at 86.830 kb on + strand, within Shewana3_0074 at 87.002 kb on + strand, within Shewana3_0074 at 87.036 kb on + strand, within Shewana3_0074 at 87.095 kb on - strand, within Shewana3_0074 at 87.169 kb on - strand at 87.331 kb on + strand at 87.334 kb on - strand at 87.384 kb on - strand at 87.402 kb on + strand, within Shewana3_0075 at 87.405 kb on - strand, within Shewana3_0075 at 87.433 kb on - strand, within Shewana3_0075 at 87.738 kb on + strand, within Shewana3_0075 at 87.783 kb on + strand, within Shewana3_0075 at 87.783 kb on + strand, within Shewana3_0075 at 87.785 kb on + strand, within Shewana3_0075 at 87.791 kb on - strand, within Shewana3_0075 at 87.801 kb on - strand, within Shewana3_0075 at 87.803 kb on - strand, within Shewana3_0075 at 87.839 kb on + strand, within Shewana3_0075 at 87.896 kb on + strand, within Shewana3_0075 at 87.896 kb on + strand, within Shewana3_0075 at 88.006 kb on + strand at 88.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 85,194 + Shewana3_0072 0.44 +0.5 85,227 - Shewana3_0072 0.47 -1.0 85,268 - Shewana3_0072 0.51 -0.6 85,272 + Shewana3_0072 0.52 +0.7 85,304 + Shewana3_0072 0.55 -0.1 85,380 + Shewana3_0072 0.62 -1.0 85,425 - Shewana3_0072 0.66 -0.1 85,517 - Shewana3_0072 0.75 -0.3 85,633 - Shewana3_0072 0.86 -1.9 85,689 + -0.8 85,710 - +0.3 85,769 - +0.2 86,004 - Shewana3_0073 0.85 +0.7 86,059 - -1.5 86,340 + Shewana3_0074 0.22 -0.0 86,348 - Shewana3_0074 0.23 +0.1 86,358 - Shewana3_0074 0.23 -0.1 86,359 - Shewana3_0074 0.24 -0.2 86,438 - Shewana3_0074 0.30 +0.8 86,469 + Shewana3_0074 0.33 -1.0 86,501 - Shewana3_0074 0.36 +0.1 86,501 - Shewana3_0074 0.36 +0.4 86,528 - Shewana3_0074 0.38 +0.3 86,530 + Shewana3_0074 0.39 -0.5 86,540 + Shewana3_0074 0.39 +0.0 86,646 + Shewana3_0074 0.49 -1.2 86,683 + Shewana3_0074 0.52 -0.4 86,733 - Shewana3_0074 0.56 -1.4 86,794 - Shewana3_0074 0.62 -0.3 86,815 - Shewana3_0074 0.64 -0.2 86,830 + Shewana3_0074 0.65 -1.8 87,002 + Shewana3_0074 0.80 -0.8 87,036 + Shewana3_0074 0.83 -0.5 87,095 - Shewana3_0074 0.88 -0.2 87,169 - -0.3 87,331 + +1.1 87,334 - +0.2 87,384 - +0.5 87,402 + Shewana3_0075 0.11 +1.2 87,405 - Shewana3_0075 0.12 +0.5 87,433 - Shewana3_0075 0.16 +0.0 87,738 + Shewana3_0075 0.57 +0.7 87,783 + Shewana3_0075 0.63 -0.3 87,783 + Shewana3_0075 0.63 +1.3 87,785 + Shewana3_0075 0.63 +1.2 87,791 - Shewana3_0075 0.64 +0.6 87,801 - Shewana3_0075 0.66 -1.1 87,803 - Shewana3_0075 0.66 -1.5 87,839 + Shewana3_0075 0.71 -0.2 87,896 + Shewana3_0075 0.79 -0.2 87,896 + Shewana3_0075 0.79 +0.4 88,006 + +1.5 88,014 - +0.0
Or see this region's nucleotide sequence