Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0057 and Shewana3_0058 are separated by 1 nucleotides Shewana3_0058 and Shewana3_0059 are separated by 44 nucleotides Shewana3_0059 and Shewana3_0060 are separated by 0 nucleotides
Shewana3_0057: Shewana3_0057 - TrkH family potassium uptake protein (RefSeq), at 67,824 to 69,185
_0057
Shewana3_0058: Shewana3_0058 - TrkA domain-containing protein (RefSeq), at 69,187 to 69,885
_0058
Shewana3_0059: Shewana3_0059 - two component transcriptional regulator (RefSeq), at 69,930 to 70,619
_0059
Shewana3_0060: Shewana3_0060 - ATPase domain-containing protein (RefSeq), at 70,620 to 71,666
_0060
Position (kb) 69
70 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 68.209 kb on - strand, within Shewana3_0057 at 68.238 kb on + strand, within Shewana3_0057 at 68.414 kb on - strand, within Shewana3_0057 at 68.435 kb on + strand, within Shewana3_0057 at 68.453 kb on + strand, within Shewana3_0057 at 68.478 kb on + strand, within Shewana3_0057 at 68.497 kb on + strand, within Shewana3_0057 at 68.942 kb on - strand, within Shewana3_0057 at 69.152 kb on + strand at 69.152 kb on + strand at 69.152 kb on + strand at 69.160 kb on - strand at 69.160 kb on - strand at 69.160 kb on - strand at 69.174 kb on + strand at 69.192 kb on - strand at 69.245 kb on - strand at 69.261 kb on + strand, within Shewana3_0058 at 69.269 kb on - strand, within Shewana3_0058 at 69.310 kb on - strand, within Shewana3_0058 at 69.323 kb on + strand, within Shewana3_0058 at 69.391 kb on - strand, within Shewana3_0058 at 69.480 kb on + strand, within Shewana3_0058 at 69.495 kb on - strand, within Shewana3_0058 at 69.566 kb on + strand, within Shewana3_0058 at 69.699 kb on + strand, within Shewana3_0058 at 69.699 kb on + strand, within Shewana3_0058 at 69.860 kb on + strand at 69.907 kb on + strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.935 kb on - strand at 69.935 kb on - strand at 69.935 kb on - strand at 69.935 kb on - strand at 70.150 kb on - strand, within Shewana3_0059 at 70.151 kb on - strand, within Shewana3_0059 at 70.339 kb on + strand, within Shewana3_0059 at 70.386 kb on + strand, within Shewana3_0059 at 70.399 kb on + strand, within Shewana3_0059 at 70.454 kb on + strand, within Shewana3_0059 at 70.462 kb on - strand, within Shewana3_0059 at 70.462 kb on - strand, within Shewana3_0059 at 70.649 kb on - strand at 70.673 kb on - strand at 70.733 kb on + strand, within Shewana3_0060 at 70.734 kb on + strand, within Shewana3_0060 at 70.742 kb on - strand, within Shewana3_0060 at 70.779 kb on - strand, within Shewana3_0060 at 70.779 kb on - strand, within Shewana3_0060 at 70.816 kb on - strand, within Shewana3_0060 at 70.823 kb on - strand, within Shewana3_0060 at 70.823 kb on - strand, within Shewana3_0060 at 70.828 kb on - strand, within Shewana3_0060 at 70.850 kb on + strand, within Shewana3_0060 at 70.876 kb on - strand, within Shewana3_0060
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 68,209 - Shewana3_0057 0.28 -0.1 68,238 + Shewana3_0057 0.30 -0.5 68,414 - Shewana3_0057 0.43 -0.8 68,435 + Shewana3_0057 0.45 -0.8 68,453 + Shewana3_0057 0.46 -5.8 68,478 + Shewana3_0057 0.48 +1.1 68,497 + Shewana3_0057 0.49 -0.4 68,942 - Shewana3_0057 0.82 +0.3 69,152 + -0.4 69,152 + -1.1 69,152 + -0.1 69,160 - -0.9 69,160 - -0.3 69,160 - +0.6 69,174 + -0.4 69,192 - -1.5 69,245 - +0.8 69,261 + Shewana3_0058 0.11 -0.9 69,269 - Shewana3_0058 0.12 +0.5 69,310 - Shewana3_0058 0.18 -0.4 69,323 + Shewana3_0058 0.19 +1.1 69,391 - Shewana3_0058 0.29 +1.9 69,480 + Shewana3_0058 0.42 -0.6 69,495 - Shewana3_0058 0.44 -0.4 69,566 + Shewana3_0058 0.54 -0.0 69,699 + Shewana3_0058 0.73 -0.7 69,699 + Shewana3_0058 0.73 +1.1 69,860 + -1.2 69,907 + +0.3 69,927 + +0.6 69,927 + -0.4 69,927 + -0.4 69,935 - +0.3 69,935 - -0.3 69,935 - +1.7 69,935 - +0.5 70,150 - Shewana3_0059 0.32 +0.2 70,151 - Shewana3_0059 0.32 -1.4 70,339 + Shewana3_0059 0.59 -0.5 70,386 + Shewana3_0059 0.66 -0.1 70,399 + Shewana3_0059 0.68 +0.2 70,454 + Shewana3_0059 0.76 -0.3 70,462 - Shewana3_0059 0.77 -0.9 70,462 - Shewana3_0059 0.77 +0.2 70,649 - +0.5 70,673 - -3.3 70,733 + Shewana3_0060 0.11 -5.0 70,734 + Shewana3_0060 0.11 -1.3 70,742 - Shewana3_0060 0.12 -0.9 70,779 - Shewana3_0060 0.15 -0.2 70,779 - Shewana3_0060 0.15 +0.2 70,816 - Shewana3_0060 0.19 +0.2 70,823 - Shewana3_0060 0.19 +0.4 70,823 - Shewana3_0060 0.19 +0.5 70,828 - Shewana3_0060 0.20 +0.9 70,850 + Shewana3_0060 0.22 +0.5 70,876 - Shewana3_0060 0.24 -0.3
Or see this region's nucleotide sequence