Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0046 and Shewana3_0047 are separated by 21 nucleotides Shewana3_0047 and Shewana3_0048 overlap by 26 nucleotides Shewana3_0048 and Shewana3_0049 are separated by 12 nucleotides
Shewana3_0046: Shewana3_0046 - hypothetical protein (RefSeq), at 56,354 to 56,608
_0046
Shewana3_0047: Shewana3_0047 - BadM/Rrf2 family transcriptional regulator (RefSeq), at 56,630 to 57,085
_0047
Shewana3_0048: Shewana3_0048 - protein of unknown function DUF610, YibQ (RefSeq), at 57,060 to 57,815
_0048
Shewana3_0049: Shewana3_0049 - C-terminal processing peptidase-3 (RefSeq), at 57,828 to 59,033
_0049
Position (kb)
57
58 Strain fitness (log2 ratio)
-2
-1
0
1 at 56.283 kb on + strand at 56.291 kb on - strand at 56.309 kb on - strand at 56.501 kb on - strand, within Shewana3_0046 at 56.540 kb on - strand, within Shewana3_0046 at 56.551 kb on + strand, within Shewana3_0046 at 56.553 kb on + strand, within Shewana3_0046 at 56.652 kb on + strand at 57.215 kb on + strand, within Shewana3_0048 at 57.223 kb on - strand, within Shewana3_0048 at 57.283 kb on - strand, within Shewana3_0048 at 57.401 kb on + strand, within Shewana3_0048 at 57.403 kb on - strand, within Shewana3_0048 at 57.431 kb on - strand, within Shewana3_0048 at 57.569 kb on - strand, within Shewana3_0048 at 58.016 kb on - strand, within Shewana3_0049 at 58.089 kb on + strand, within Shewana3_0049 at 58.255 kb on + strand, within Shewana3_0049 at 58.376 kb on + strand, within Shewana3_0049 at 58.376 kb on + strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.540 kb on - strand, within Shewana3_0049 at 58.544 kb on + strand, within Shewana3_0049 at 58.704 kb on + strand, within Shewana3_0049
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 56,283 + +1.5 56,291 - +0.2 56,309 - +0.5 56,501 - Shewana3_0046 0.58 -0.3 56,540 - Shewana3_0046 0.73 +0.7 56,551 + Shewana3_0046 0.77 +1.2 56,553 + Shewana3_0046 0.78 +0.8 56,652 + -1.6 57,215 + Shewana3_0048 0.21 -0.9 57,223 - Shewana3_0048 0.22 +0.5 57,283 - Shewana3_0048 0.29 +0.7 57,401 + Shewana3_0048 0.45 +1.1 57,403 - Shewana3_0048 0.45 -1.7 57,431 - Shewana3_0048 0.49 -1.2 57,569 - Shewana3_0048 0.67 -0.3 58,016 - Shewana3_0049 0.16 -1.9 58,089 + Shewana3_0049 0.22 -1.0 58,255 + Shewana3_0049 0.35 -1.3 58,376 + Shewana3_0049 0.45 -1.1 58,376 + Shewana3_0049 0.45 -0.4 58,384 - Shewana3_0049 0.46 +0.6 58,384 - Shewana3_0049 0.46 -2.3 58,384 - Shewana3_0049 0.46 -0.7 58,384 - Shewana3_0049 0.46 -1.8 58,540 - Shewana3_0049 0.59 +1.1 58,544 + Shewana3_0049 0.59 -0.5 58,704 + Shewana3_0049 0.73 -0.6
Or see this region's nucleotide sequence