Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0012 and Shewana3_0013 are separated by 82 nucleotides Shewana3_0013 and Shewana3_0014 are separated by 126 nucleotides Shewana3_0014 and Shewana3_0015 are separated by 158 nucleotides
Shewana3_0012: Shewana3_0012 - DNA gyrase subunit B (RefSeq), at 13,416 to 15,833
_0012
Shewana3_0013: Shewana3_0013 - glutathione S-transferase domain-containing protein (RefSeq), at 15,916 to 16,572
_0013
Shewana3_0014: Shewana3_0014 - transcriptional regulator (RefSeq), at 16,699 to 17,547
_0014
Shewana3_0015: Shewana3_0015 - putative signal transduction protein (RefSeq), at 17,706 to 18,749
_0015
Position (kb)
16
17
18 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 16.131 kb on - strand, within Shewana3_0013 at 16.131 kb on - strand, within Shewana3_0013 at 16.247 kb on - strand, within Shewana3_0013 at 16.480 kb on + strand, within Shewana3_0013 at 16.598 kb on - strand at 16.824 kb on - strand, within Shewana3_0014 at 16.980 kb on - strand, within Shewana3_0014 at 16.982 kb on + strand, within Shewana3_0014 at 16.990 kb on - strand, within Shewana3_0014 at 17.244 kb on - strand, within Shewana3_0014 at 17.361 kb on + strand, within Shewana3_0014 at 17.412 kb on - strand, within Shewana3_0014 at 17.523 kb on + strand at 17.589 kb on - strand at 17.845 kb on + strand, within Shewana3_0015 at 17.876 kb on + strand, within Shewana3_0015 at 18.064 kb on - strand, within Shewana3_0015 at 18.125 kb on + strand, within Shewana3_0015 at 18.161 kb on + strand, within Shewana3_0015 at 18.161 kb on + strand, within Shewana3_0015 at 18.204 kb on - strand, within Shewana3_0015
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 16,131 - Shewana3_0013 0.33 -0.1 16,131 - Shewana3_0013 0.33 -0.5 16,247 - Shewana3_0013 0.50 -0.8 16,480 + Shewana3_0013 0.86 -1.7 16,598 - +0.8 16,824 - Shewana3_0014 0.15 +1.7 16,980 - Shewana3_0014 0.33 -0.1 16,982 + Shewana3_0014 0.33 -1.5 16,990 - Shewana3_0014 0.34 -0.9 17,244 - Shewana3_0014 0.64 -2.5 17,361 + Shewana3_0014 0.78 -0.6 17,412 - Shewana3_0014 0.84 +0.7 17,523 + -0.2 17,589 - -0.5 17,845 + Shewana3_0015 0.13 +0.3 17,876 + Shewana3_0015 0.16 -0.2 18,064 - Shewana3_0015 0.34 +0.2 18,125 + Shewana3_0015 0.40 +0.5 18,161 + Shewana3_0015 0.44 +2.5 18,161 + Shewana3_0015 0.44 +0.8 18,204 - Shewana3_0015 0.48 -0.7
Or see this region's nucleotide sequence