Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4381 and Shewana3_4382 are separated by 21 nucleotides Shewana3_4382 and Shewana3_4383 are separated by 19 nucleotides Shewana3_4383 and Shewana3_4384 overlap by 11 nucleotides
Shewana3_4381: Shewana3_4381 - hypothetical protein (RefSeq), at 267,647 to 267,979
_4381
Shewana3_4382: Shewana3_4382 - hypothetical protein (RefSeq), at 268,001 to 268,531
_4382
Shewana3_4383: Shewana3_4383 - hypothetical protein (RefSeq), at 268,551 to 269,246
_4383
Shewana3_4384: Shewana3_4384 - CzcA family heavy metal efflux protein (RefSeq), at 269,236 to 272,379
_4384
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 267.899 kb on - strand, within Shewana3_4381 at 267.916 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.935 kb on + strand, within Shewana3_4381 at 267.961 kb on - strand at 267.961 kb on - strand at 268.053 kb on + strand at 268.053 kb on + strand at 268.061 kb on - strand, within Shewana3_4382 at 268.186 kb on - strand, within Shewana3_4382 at 268.205 kb on + strand, within Shewana3_4382 at 268.228 kb on + strand, within Shewana3_4382 at 268.319 kb on - strand, within Shewana3_4382 at 268.336 kb on + strand, within Shewana3_4382 at 268.359 kb on - strand, within Shewana3_4382 at 268.433 kb on - strand, within Shewana3_4382 at 268.567 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.603 kb on - strand at 268.613 kb on - strand at 268.689 kb on - strand, within Shewana3_4383 at 268.790 kb on + strand, within Shewana3_4383 at 268.798 kb on - strand, within Shewana3_4383 at 269.085 kb on - strand, within Shewana3_4383 at 269.226 kb on - strand at 269.391 kb on + strand at 269.399 kb on - strand at 269.463 kb on - strand at 269.477 kb on + strand at 269.550 kb on + strand at 269.740 kb on - strand, within Shewana3_4384 at 269.823 kb on - strand, within Shewana3_4384 at 270.042 kb on + strand, within Shewana3_4384 at 270.127 kb on - strand, within Shewana3_4384 at 270.158 kb on + strand, within Shewana3_4384
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 267,899 - Shewana3_4381 0.76 +0.6 267,916 + Shewana3_4381 0.81 -2.0 267,917 + Shewana3_4381 0.81 -0.8 267,917 + Shewana3_4381 0.81 +0.8 267,917 + Shewana3_4381 0.81 +0.8 267,917 + Shewana3_4381 0.81 +1.8 267,925 - Shewana3_4381 0.83 -0.5 267,925 - Shewana3_4381 0.83 +0.5 267,925 - Shewana3_4381 0.83 -0.9 267,925 - Shewana3_4381 0.83 -2.1 267,925 - Shewana3_4381 0.83 -1.3 267,925 - Shewana3_4381 0.83 +0.1 267,925 - Shewana3_4381 0.83 +0.4 267,925 - Shewana3_4381 0.83 -0.7 267,935 + Shewana3_4381 0.86 -0.2 267,961 - -1.1 267,961 - -0.4 268,053 + +0.9 268,053 + +0.8 268,061 - Shewana3_4382 0.11 +0.9 268,186 - Shewana3_4382 0.35 -0.5 268,205 + Shewana3_4382 0.38 -1.3 268,228 + Shewana3_4382 0.43 -1.0 268,319 - Shewana3_4382 0.60 -0.9 268,336 + Shewana3_4382 0.63 -0.4 268,359 - Shewana3_4382 0.67 -0.3 268,433 - Shewana3_4382 0.81 -0.5 268,567 + +0.2 268,595 + +0.8 268,595 + -0.1 268,595 + -1.5 268,595 + -2.0 268,595 + +1.9 268,595 + +1.8 268,603 - +0.6 268,613 - -0.3 268,689 - Shewana3_4383 0.20 -0.3 268,790 + Shewana3_4383 0.34 -1.7 268,798 - Shewana3_4383 0.35 -0.3 269,085 - Shewana3_4383 0.77 -0.8 269,226 - -0.0 269,391 + +0.2 269,399 - +0.2 269,463 - +0.3 269,477 + -0.3 269,550 + -1.5 269,740 - Shewana3_4384 0.16 -0.2 269,823 - Shewana3_4384 0.19 -0.2 270,042 + Shewana3_4384 0.26 +0.4 270,127 - Shewana3_4384 0.28 +1.4 270,158 + Shewana3_4384 0.29 -3.7
Or see this region's nucleotide sequence