Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4279

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4278 and Shewana3_4279 are separated by 384 nucleotidesShewana3_4279 and Shewana3_4280 are separated by 374 nucleotides Shewana3_4278: Shewana3_4278 - hypothetical protein (RefSeq), at 159,748 to 160,467 _4278 Shewana3_4279: Shewana3_4279 - hypothetical protein (RefSeq), at 160,852 to 161,304 _4279 Shewana3_4280: Shewana3_4280 - putative periplasmic protein (RefSeq), at 161,679 to 164,060 _4280 Position (kb) 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 159.902 kb on + strand, within Shewana3_4278at 160.023 kb on + strand, within Shewana3_4278at 160.036 kb on + strand, within Shewana3_4278at 160.187 kb on - strand, within Shewana3_4278at 160.311 kb on + strand, within Shewana3_4278at 160.389 kb on + strand, within Shewana3_4278at 160.430 kb on + strandat 160.446 kb on + strandat 160.446 kb on + strandat 160.446 kb on + strandat 160.451 kb on + strandat 160.451 kb on + strandat 160.454 kb on - strandat 160.454 kb on - strandat 160.454 kb on - strandat 160.454 kb on - strandat 160.499 kb on - strandat 160.547 kb on + strandat 160.605 kb on + strandat 160.608 kb on - strandat 160.664 kb on + strandat 160.919 kb on - strand, within Shewana3_4279at 160.926 kb on - strand, within Shewana3_4279at 161.111 kb on + strand, within Shewana3_4279at 161.235 kb on - strand, within Shewana3_4279at 161.254 kb on - strand, within Shewana3_4279at 161.298 kb on + strandat 161.306 kb on - strandat 161.306 kb on - strandat 161.312 kb on + strandat 161.312 kb on - strandat 161.320 kb on - strandat 161.320 kb on - strandat 161.544 kb on + strandat 161.544 kb on + strandat 161.768 kb on - strandat 161.774 kb on - strandat 161.908 kb on + strandat 161.933 kb on - strand, within Shewana3_4280at 161.964 kb on - strand, within Shewana3_4280at 162.001 kb on - strand, within Shewana3_4280at 162.031 kb on + strand, within Shewana3_4280at 162.169 kb on - strand, within Shewana3_4280at 162.263 kb on - strand, within Shewana3_4280

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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159,902 + Shewana3_4278 0.21 +0.4
160,023 + Shewana3_4278 0.38 +1.4
160,036 + Shewana3_4278 0.40 +0.4
160,187 - Shewana3_4278 0.61 -0.3
160,311 + Shewana3_4278 0.78 +0.2
160,389 + Shewana3_4278 0.89 -0.3
160,430 + -0.9
160,446 + +1.7
160,446 + +0.0
160,446 + -0.1
160,451 + +0.4
160,451 + -0.2
160,454 - -2.9
160,454 - -1.1
160,454 - -1.2
160,454 - -1.2
160,499 - +0.0
160,547 + -0.9
160,605 + -1.1
160,608 - -0.8
160,664 + -0.9
160,919 - Shewana3_4279 0.15 +0.5
160,926 - Shewana3_4279 0.16 -1.5
161,111 + Shewana3_4279 0.57 +2.1
161,235 - Shewana3_4279 0.85 -2.0
161,254 - Shewana3_4279 0.89 +0.2
161,298 + -1.7
161,306 - -2.7
161,306 - -0.5
161,312 + -0.6
161,312 - -0.3
161,320 - -0.2
161,320 - +0.7
161,544 + -0.0
161,544 + +0.3
161,768 - -0.4
161,774 - -1.2
161,908 + -0.9
161,933 - Shewana3_4280 0.11 -0.6
161,964 - Shewana3_4280 0.12 -2.7
162,001 - Shewana3_4280 0.14 +0.2
162,031 + Shewana3_4280 0.15 +0.7
162,169 - Shewana3_4280 0.21 -0.2
162,263 - Shewana3_4280 0.25 -1.6

Or see this region's nucleotide sequence