Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4278 and Shewana3_4279 are separated by 384 nucleotides Shewana3_4279 and Shewana3_4280 are separated by 374 nucleotides
Shewana3_4278: Shewana3_4278 - hypothetical protein (RefSeq), at 159,748 to 160,467
_4278
Shewana3_4279: Shewana3_4279 - hypothetical protein (RefSeq), at 160,852 to 161,304
_4279
Shewana3_4280: Shewana3_4280 - putative periplasmic protein (RefSeq), at 161,679 to 164,060
_4280
Position (kb)
160
161
162 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 159.902 kb on + strand, within Shewana3_4278 at 160.023 kb on + strand, within Shewana3_4278 at 160.036 kb on + strand, within Shewana3_4278 at 160.187 kb on - strand, within Shewana3_4278 at 160.311 kb on + strand, within Shewana3_4278 at 160.389 kb on + strand, within Shewana3_4278 at 160.430 kb on + strand at 160.446 kb on + strand at 160.446 kb on + strand at 160.446 kb on + strand at 160.451 kb on + strand at 160.451 kb on + strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.499 kb on - strand at 160.547 kb on + strand at 160.605 kb on + strand at 160.608 kb on - strand at 160.664 kb on + strand at 160.919 kb on - strand, within Shewana3_4279 at 160.926 kb on - strand, within Shewana3_4279 at 161.111 kb on + strand, within Shewana3_4279 at 161.235 kb on - strand, within Shewana3_4279 at 161.254 kb on - strand, within Shewana3_4279 at 161.298 kb on + strand at 161.306 kb on - strand at 161.306 kb on - strand at 161.312 kb on + strand at 161.312 kb on - strand at 161.320 kb on - strand at 161.320 kb on - strand at 161.544 kb on + strand at 161.544 kb on + strand at 161.768 kb on - strand at 161.774 kb on - strand at 161.908 kb on + strand at 161.933 kb on - strand, within Shewana3_4280 at 161.964 kb on - strand, within Shewana3_4280 at 162.001 kb on - strand, within Shewana3_4280 at 162.031 kb on + strand, within Shewana3_4280 at 162.169 kb on - strand, within Shewana3_4280 at 162.263 kb on - strand, within Shewana3_4280
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 159,902 + Shewana3_4278 0.21 +0.4 160,023 + Shewana3_4278 0.38 +1.4 160,036 + Shewana3_4278 0.40 +0.4 160,187 - Shewana3_4278 0.61 -0.3 160,311 + Shewana3_4278 0.78 +0.2 160,389 + Shewana3_4278 0.89 -0.3 160,430 + -0.9 160,446 + +1.7 160,446 + +0.0 160,446 + -0.1 160,451 + +0.4 160,451 + -0.2 160,454 - -2.9 160,454 - -1.1 160,454 - -1.2 160,454 - -1.2 160,499 - +0.0 160,547 + -0.9 160,605 + -1.1 160,608 - -0.8 160,664 + -0.9 160,919 - Shewana3_4279 0.15 +0.5 160,926 - Shewana3_4279 0.16 -1.5 161,111 + Shewana3_4279 0.57 +2.1 161,235 - Shewana3_4279 0.85 -2.0 161,254 - Shewana3_4279 0.89 +0.2 161,298 + -1.7 161,306 - -2.7 161,306 - -0.5 161,312 + -0.6 161,312 - -0.3 161,320 - -0.2 161,320 - +0.7 161,544 + -0.0 161,544 + +0.3 161,768 - -0.4 161,774 - -1.2 161,908 + -0.9 161,933 - Shewana3_4280 0.11 -0.6 161,964 - Shewana3_4280 0.12 -2.7 162,001 - Shewana3_4280 0.14 +0.2 162,031 + Shewana3_4280 0.15 +0.7 162,169 - Shewana3_4280 0.21 -0.2 162,263 - Shewana3_4280 0.25 -1.6
Or see this region's nucleotide sequence