Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4195 and Shewana3_4196 are separated by 121 nucleotides Shewana3_4196 and Shewana3_4197 are separated by 111 nucleotides Shewana3_4197 and Shewana3_4198 are separated by 506 nucleotides
Shewana3_4195: Shewana3_4195 - hypothetical protein (RefSeq), at 58,048 to 58,335
_4195
Shewana3_4196: Shewana3_4196 - hypothetical protein (RefSeq), at 58,457 to 58,891
_4196
Shewana3_4197: Shewana3_4197 - putative toxin of addiction system (RefSeq), at 59,003 to 59,368
_4197
Shewana3_4198: Shewana3_4198 - hypothetical protein (RefSeq), at 59,875 to 60,306
_4198
Position (kb)
59
60 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 58.080 kb on - strand, within Shewana3_4195 at 58.201 kb on - strand, within Shewana3_4195 at 58.219 kb on + strand, within Shewana3_4195 at 58.292 kb on - strand, within Shewana3_4195 at 58.343 kb on + strand at 58.353 kb on + strand at 58.353 kb on + strand at 58.360 kb on + strand at 58.370 kb on + strand at 58.378 kb on - strand at 58.381 kb on + strand at 58.427 kb on - strand at 58.434 kb on + strand at 58.454 kb on + strand at 58.547 kb on - strand, within Shewana3_4196 at 58.564 kb on + strand, within Shewana3_4196 at 58.572 kb on - strand, within Shewana3_4196 at 58.582 kb on - strand, within Shewana3_4196 at 58.586 kb on - strand, within Shewana3_4196 at 58.633 kb on + strand, within Shewana3_4196 at 58.687 kb on - strand, within Shewana3_4196 at 59.209 kb on + strand, within Shewana3_4197 at 59.366 kb on - strand at 59.515 kb on - strand at 59.524 kb on - strand at 59.645 kb on + strand at 59.754 kb on - strand at 59.762 kb on + strand at 59.856 kb on + strand at 59.859 kb on - strand at 59.859 kb on - strand at 60.007 kb on - strand, within Shewana3_4198 at 60.047 kb on - strand, within Shewana3_4198 at 60.060 kb on + strand, within Shewana3_4198 at 60.140 kb on - strand, within Shewana3_4198 at 60.330 kb on + strand at 60.353 kb on + strand at 60.355 kb on + strand at 60.362 kb on + strand at 60.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 58,080 - Shewana3_4195 0.11 +0.2 58,201 - Shewana3_4195 0.53 +0.5 58,219 + Shewana3_4195 0.59 -0.4 58,292 - Shewana3_4195 0.85 -0.5 58,343 + -0.8 58,353 + -0.2 58,353 + -0.4 58,360 + +0.8 58,370 + +0.6 58,378 - -0.4 58,381 + -0.2 58,427 - -0.2 58,434 + -0.3 58,454 + -0.4 58,547 - Shewana3_4196 0.21 -0.5 58,564 + Shewana3_4196 0.25 +0.1 58,572 - Shewana3_4196 0.26 +0.2 58,582 - Shewana3_4196 0.29 +0.3 58,586 - Shewana3_4196 0.30 -0.4 58,633 + Shewana3_4196 0.40 +0.3 58,687 - Shewana3_4196 0.53 +0.2 59,209 + Shewana3_4197 0.56 -0.8 59,366 - +0.8 59,515 - -1.2 59,524 - -3.2 59,645 + -0.9 59,754 - -0.1 59,762 + +0.4 59,856 + -2.6 59,859 - +1.3 59,859 - +0.2 60,007 - Shewana3_4198 0.31 +1.8 60,047 - Shewana3_4198 0.40 +0.4 60,060 + Shewana3_4198 0.43 +1.1 60,140 - Shewana3_4198 0.61 +0.9 60,330 + -0.2 60,353 + -0.7 60,355 + -0.6 60,362 + -0.8 60,363 - +1.2
Or see this region's nucleotide sequence