Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4142 and Shewana3_4143 are separated by 83 nucleotides Shewana3_4143 and Shewana3_4144 are separated by 43 nucleotides Shewana3_4144 and Shewana3_4145 are separated by 36 nucleotides
Shewana3_4142: Shewana3_4142 - IS4 family transposase (RefSeq), at 1,491 to 2,471
_4142
Shewana3_4143: Shewana3_4143 - hypothetical protein (RefSeq), at 2,555 to 2,836
_4143
Shewana3_4144: Shewana3_4144 - plastocyanin domain-containing protein (RefSeq), at 2,880 to 3,239
_4144
Shewana3_4145: Shewana3_4145 - copper-translocating P-type ATPase (RefSeq), at 3,276 to 5,612
_4145
Position (kb)
2
3 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1.596 kb on - strand, within Shewana3_4142 at 1.689 kb on - strand, within Shewana3_4142 at 1.980 kb on - strand, within Shewana3_4142 at 2.130 kb on - strand, within Shewana3_4142 at 2.130 kb on - strand, within Shewana3_4142 at 2.181 kb on - strand, within Shewana3_4142 at 2.252 kb on + strand, within Shewana3_4142 at 2.276 kb on - strand, within Shewana3_4142 at 2.337 kb on - strand, within Shewana3_4142 at 2.352 kb on - strand, within Shewana3_4142 at 2.545 kb on - strand at 2.898 kb on + strand at 2.903 kb on + strand at 2.906 kb on - strand at 3.106 kb on + strand, within Shewana3_4144 at 3.209 kb on + strand at 3.231 kb on - strand at 3.321 kb on - strand at 3.486 kb on - strand at 3.501 kb on + strand at 3.828 kb on - strand, within Shewana3_4145
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 1,596 - Shewana3_4142 0.11 -0.2 1,689 - Shewana3_4142 0.20 -0.3 1,980 - Shewana3_4142 0.50 -1.0 2,130 - Shewana3_4142 0.65 -1.2 2,130 - Shewana3_4142 0.65 -1.2 2,181 - Shewana3_4142 0.70 +0.6 2,252 + Shewana3_4142 0.78 -0.9 2,276 - Shewana3_4142 0.80 -1.1 2,337 - Shewana3_4142 0.86 +0.4 2,352 - Shewana3_4142 0.88 -0.5 2,545 - -0.9 2,898 + -1.0 2,903 + +0.6 2,906 - -1.0 3,106 + Shewana3_4144 0.63 -4.3 3,209 + -0.7 3,231 - -1.5 3,321 - +1.8 3,486 - -0.7 3,501 + -1.7 3,828 - Shewana3_4145 0.24 +1.0
Or see this region's nucleotide sequence