Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03980

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
2,983,595	+		CCNA_02829	0.15	-2.1
2,983,598	-		CCNA_02829	0.16	+0.5
2,983,605	+		CCNA_02829	0.16	+1.0
2,983,613	-		CCNA_02829	0.17	-1.2
2,983,618	-		CCNA_02829	0.17	-0.5
2,983,678	+		CCNA_02829	0.22	-0.2
2,983,683	-		CCNA_02829	0.23	+0.3
2,983,704	+		CCNA_02829	0.24	-1.5
2,983,704	-		CCNA_02829	0.24	-0.6
2,983,706	+		CCNA_02829	0.25	+0.9
2,983,714	-		CCNA_02829	0.25	-0.8
2,983,790	-		CCNA_02829	0.32	-1.2
2,983,795	+		CCNA_02829	0.32	-1.3
2,983,803	-		CCNA_02829	0.33	+1.2
2,983,828	+		CCNA_02829	0.35	-1.2
2,983,836	-		CCNA_02829	0.36	+0.3
2,983,838	+		CCNA_02829	0.36	-0.4
2,983,901	+		CCNA_02829	0.41	-0.1
2,983,909	-		CCNA_02829	0.42	+0.4
2,983,911	+		CCNA_02829	0.42	+1.6
2,983,928	-		CCNA_02829	0.43	-0.1
2,983,931	-		CCNA_02829	0.44	+0.6
2,983,933	-		CCNA_02829	0.44	-1.0
2,983,969	-		CCNA_02829	0.47	-1.9
2,984,000	-		CCNA_02829	0.49	+0.3
2,984,001	-		CCNA_02829	0.50	+0.3
2,984,001	-		CCNA_02829	0.50	-0.2
2,984,014	-		CCNA_02829	0.51	-1.8
2,984,065	+		CCNA_02829	0.55	+0.2
2,984,065	+		CCNA_02829	0.55	-0.7
2,984,065	+		CCNA_02829	0.55	+0.4
2,984,075	+		CCNA_02829	0.56	+0.4
2,984,075	+		CCNA_02829	0.56	-1.1
2,984,078	-		CCNA_02829	0.56	-2.1
2,984,086	+		CCNA_02829	0.57	-2.1
2,984,088	-		CCNA_02829	0.57	-0.5
2,984,094	-		CCNA_02829	0.57	+1.0
2,984,111	+		CCNA_02829	0.59	+0.7
2,984,119	-		CCNA_02829	0.59	-0.9
2,984,138	+		CCNA_02829	0.61	+0.2
2,984,151	-		CCNA_02829	0.62	-0.8
2,984,159	-		CCNA_02829	0.63	+0.2
2,984,161	-		CCNA_02829	0.63	+0.5
2,984,327	+		CCNA_02829	0.77	+1.9
2,984,327	+		CCNA_02829	0.77	+2.1
2,984,332	+		CCNA_02829	0.77	+0.6
2,984,335	-		CCNA_02829	0.78	-1.6
2,984,349	+		CCNA_02829	0.79	-0.7
2,984,350	-		CCNA_02829	0.79	+1.0
2,984,386	+		CCNA_02829	0.82	-0.6
2,984,426	-		CCNA_02829	0.85	-0.2
2,984,426	-		CCNA_02829	0.85	-0.7
2,984,427	+		CCNA_02829	0.85	+0.4
2,984,439	+				+0.9
2,984,462	+		CCNA_02829	0.88	+0.9
2,984,465	-		CCNA_02829	0.89	+1.4
2,984,500	-				-0.8
2,984,505	-				-0.1
2,984,519	+				-0.1
2,984,526	+				-1.2
2,984,527	-				+2.0
2,984,527	-				+2.5
2,984,527	-				+1.9
2,984,527	-				+2.5
2,984,527	-				+2.6
2,984,532	+				+1.9
2,984,532	+				-0.4
2,984,532	+				-0.9
2,984,540	-				-2.0
2,984,540	-				-0.2
2,984,552	-				-1.0
2,984,552	-				-2.0
2,984,563	+				+0.5
2,984,615	-		CCNA_03980	0.16	+1.2
2,984,615	-		CCNA_03980	0.16	+0.8
2,984,615	-		CCNA_03980	0.16	-0.5
2,984,620	-		CCNA_03980	0.20	+1.5
2,984,641	-		CCNA_03980	0.37	-0.3
2,984,652	+		CCNA_03980	0.45	-0.4
2,984,660	-		CCNA_03980	0.52	+0.3
2,984,669	-		CCNA_03980	0.59	-2.0
2,984,675	+		CCNA_03980	0.63	-0.2
2,984,675	+		CCNA_03980	0.63	+1.2
2,984,675	+		CCNA_03980	0.63	+0.3
2,984,675	+		CCNA_03980	0.63	-1.6
2,984,675	+		CCNA_03980	0.63	+0.7
2,984,683	-		CCNA_03980	0.70	-1.4
2,984,683	-		CCNA_03980	0.70	-0.9
2,984,683	-		CCNA_03980	0.70	+0.0
2,984,683	-		CCNA_03980	0.70	+1.2
2,984,683	-		CCNA_03980	0.70	-1.0
2,984,708	+				+0.3
2,984,708	+				+0.5
2,984,708	+				+0.8
2,984,716	-				-1.3
2,984,716	-				-2.2
2,984,780	-				-0.9
2,984,780	-				-1.0
2,984,787	+				+0.0
2,985,019	+		CCNA_02830	0.30	+0.7
2,985,057	+		CCNA_02830	0.53	+1.0
2,985,057	+		CCNA_02830	0.53	-0.7
2,985,065	-		CCNA_02830	0.57	+0.2
2,985,091	-		CCNA_02830	0.73	+0.2
2,985,120	-		CCNA_02830	0.89	-1.5
2,985,126	+				-0.1
2,985,199	-				+0.4
2,985,263	-				+0.1
2,985,269	+				-0.1
2,985,282	+		CCNA_02831	0.12	-1.8
2,985,296	+		CCNA_02831	0.14	-0.6
2,985,296	+		CCNA_02831	0.14	-0.7
2,985,296	+		CCNA_02831	0.14	-1.4
2,985,304	-		CCNA_02831	0.16	+0.9
2,985,304	-		CCNA_02831	0.16	-0.1
2,985,306	+		CCNA_02831	0.16	-0.8
2,985,376	+		CCNA_02831	0.29	+0.1
2,985,449	-		CCNA_02831	0.42	-1.3
2,985,449	-		CCNA_02831	0.42	-1.6
2,985,473	+		CCNA_02831	0.46	+0.2
2,985,478	+		CCNA_02831	0.47	+0.0
2,985,497	+		CCNA_02831	0.50	-0.0
2,985,505	-		CCNA_02831	0.52	-0.4
2,985,549	+		CCNA_02831	0.60	-0.7
2,985,555	+		CCNA_02831	0.61	+1.4
2,985,556	+		CCNA_02831	0.61	+0.7
2,985,557	-		CCNA_02831	0.61	+1.5
2,985,557	-		CCNA_02831	0.61	+0.7
2,985,572	+		CCNA_02831	0.64	+0.6
2,985,572	+		CCNA_02831	0.64	-1.9
2,985,574	+		CCNA_02831	0.64	-1.1
2,985,578	+		CCNA_02831	0.65	-0.0
2,985,580	-		CCNA_02831	0.65	-0.1
2,985,588	+		CCNA_02831	0.67	-0.8
2,985,594	+		CCNA_02831	0.68	-1.9
2,985,594	+		CCNA_02831	0.68	-1.6
2,985,594	+		CCNA_02831	0.68	-0.7
2,985,594	+		CCNA_02831	0.68	+0.4
2,985,594	+		CCNA_02831	0.68	+0.1
2,985,595	-		CCNA_02831	0.68	+0.3
2,985,602	-		CCNA_02831	0.69	-0.2
2,985,602	-		CCNA_02831	0.69	-1.5
2,985,602	-		CCNA_02831	0.69	+0.7
2,985,602	-		CCNA_02831	0.69	+1.2
2,985,602	-		CCNA_02831	0.69	+0.3
2,985,602	-		CCNA_02831	0.69	+0.4
2,985,602	-		CCNA_02831	0.69	+2.0
2,985,639	+		CCNA_02831	0.76	-0.3
2,985,642	+		CCNA_02831	0.76	+0.3
2,985,649	+		CCNA_02831	0.78	-0.3
2,985,649	+		CCNA_02831	0.78	-0.4
2,985,649	+		CCNA_02831	0.78	+0.1
2,985,649	+		CCNA_02831	0.78	+0.6
2,985,649	+		CCNA_02831	0.78	-0.3
2,985,649	+		CCNA_02831	0.78	-0.3
2,985,649	+		CCNA_02831	0.78	-1.9
2,985,650	-		CCNA_02831	0.78	-2.1
2,985,650	-		CCNA_02831	0.78	+0.6
2,985,657	-		CCNA_02831	0.79	-0.7
2,985,657	-		CCNA_02831	0.79	-0.3
2,985,657	-		CCNA_02831	0.79	-1.7
2,985,657	-		CCNA_02831	0.79	+1.5
2,985,657	-		CCNA_02831	0.79	-0.7
2,985,657	-		CCNA_02831	0.79	-1.3
2,985,685	+		CCNA_02831	0.84	+1.0
2,985,709	+		CCNA_02831	0.88	-0.6
2,985,719	+				+0.8
2,985,719	+				-1.0
2,985,720	+				+0.7
2,985,720	+				+1.5
2,985,720	+				+0.7