Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00718 and CCNA_03930 are separated by 6 nucleotides CCNA_03930 and CCNA_03931 are separated by 542 nucleotides CCNA_03931 and CCNA_03932 are separated by 2 nucleotides CCNA_03932 and CCNA_03933 are separated by 30 nucleotides CCNA_03933 and CCNA_00719 are separated by 115 nucleotides
CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783
_00718
CCNA_03930: CCNA_03930 - hypothetical protein, at 772,790 to 772,894
_03930
CCNA_03931: CCNA_03931 - hypothetical protein, at 773,437 to 773,730
_03931
CCNA_03932: CCNA_03932 - hypothetical protein, at 773,733 to 773,987
_03932
CCNA_03933: CCNA_03933 - hypothetical protein, at 774,018 to 774,278
_03933
CCNA_00719: CCNA_00719 - type I secretion adaptor protein hlyD, at 774,394 to 775,635
_00719
Position (kb) 773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 772.747 kb on + strand at 772.752 kb on + strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.808 kb on - strand, within CCNA_03930 at 772.812 kb on + strand, within CCNA_03930 at 772.842 kb on + strand, within CCNA_03930 at 772.847 kb on + strand, within CCNA_03930 at 772.850 kb on - strand, within CCNA_03930 at 772.852 kb on + strand at 772.860 kb on - strand, within CCNA_03930 at 772.860 kb on - strand, within CCNA_03930 at 772.866 kb on + strand, within CCNA_03930 at 772.869 kb on - strand, within CCNA_03930 at 772.874 kb on - strand, within CCNA_03930 at 772.874 kb on - strand, within CCNA_03930 at 772.897 kb on - strand at 772.956 kb on + strand at 772.956 kb on + strand at 772.964 kb on - strand at 772.969 kb on + strand at 772.985 kb on + strand at 772.985 kb on + strand at 772.991 kb on + strand at 772.991 kb on + strand at 772.991 kb on + strand at 772.999 kb on - strand at 772.999 kb on - strand at 772.999 kb on - strand at 772.999 kb on - strand at 773.010 kb on - strand at 773.030 kb on - strand at 773.076 kb on - strand at 773.080 kb on + strand at 773.094 kb on + strand at 773.095 kb on - strand at 773.101 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.118 kb on - strand at 773.120 kb on + strand at 773.126 kb on - strand at 773.126 kb on - strand at 773.128 kb on - strand at 773.161 kb on + strand at 773.184 kb on - strand at 773.192 kb on + strand at 773.193 kb on + strand at 773.193 kb on + strand at 773.202 kb on - strand at 773.202 kb on - strand at 773.213 kb on + strand at 773.213 kb on + strand at 773.221 kb on - strand at 773.221 kb on - strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.256 kb on - strand at 773.256 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.268 kb on - strand at 773.269 kb on - strand at 773.270 kb on + strand at 773.270 kb on + strand at 773.271 kb on + strand at 773.278 kb on - strand at 773.279 kb on - strand at 773.279 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.732 kb on + strand at 773.732 kb on + strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.742 kb on + strand at 773.749 kb on + strand at 773.767 kb on - strand, within CCNA_03932 at 773.791 kb on - strand, within CCNA_03932 at 773.793 kb on + strand, within CCNA_03932 at 773.793 kb on + strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.828 kb on + strand, within CCNA_03932 at 773.833 kb on + strand, within CCNA_03932 at 773.841 kb on - strand, within CCNA_03932 at 773.851 kb on - strand, within CCNA_03932 at 773.870 kb on - strand, within CCNA_03932 at 773.891 kb on + strand, within CCNA_03932 at 773.895 kb on - strand, within CCNA_03932 at 773.924 kb on + strand, within CCNA_03932 at 773.932 kb on - strand, within CCNA_03932 at 773.932 kb on - strand, within CCNA_03932 at 773.935 kb on + strand, within CCNA_03932 at 773.936 kb on + strand, within CCNA_03932 at 773.936 kb on + strand, within CCNA_03932 at 773.936 kb on + strand, within CCNA_03932 at 773.944 kb on - strand, within CCNA_03932 at 773.944 kb on - strand, within CCNA_03932 at 773.944 kb on - strand, within CCNA_03932 at 773.946 kb on + strand, within CCNA_03932 at 773.946 kb on + strand, within CCNA_03932 at 773.974 kb on - strand at 774.001 kb on + strand at 774.057 kb on + strand, within CCNA_03933 at 774.057 kb on + strand, within CCNA_03933 at 774.060 kb on + strand, within CCNA_03933 at 774.090 kb on - strand, within CCNA_03933 at 774.090 kb on - strand, within CCNA_03933 at 774.101 kb on + strand, within CCNA_03933 at 774.107 kb on + strand, within CCNA_03933 at 774.109 kb on - strand, within CCNA_03933 at 774.119 kb on + strand, within CCNA_03933 at 774.120 kb on - strand, within CCNA_03933 at 774.124 kb on + strand, within CCNA_03933 at 774.124 kb on + strand, within CCNA_03933 at 774.134 kb on + strand, within CCNA_03933 at 774.148 kb on + strand, within CCNA_03933 at 774.188 kb on + strand, within CCNA_03933 at 774.192 kb on + strand, within CCNA_03933 at 774.207 kb on + strand, within CCNA_03933 at 774.214 kb on + strand, within CCNA_03933 at 774.285 kb on + strand at 774.285 kb on + strand at 774.293 kb on + strand at 774.293 kb on - strand at 774.293 kb on - strand at 774.293 kb on - strand at 774.405 kb on + strand at 774.448 kb on + strand at 774.467 kb on + strand at 774.475 kb on - strand at 774.511 kb on + strand at 774.516 kb on + strand at 774.535 kb on - strand, within CCNA_00719 at 774.596 kb on - strand, within CCNA_00719 at 774.626 kb on - strand, within CCNA_00719 at 774.685 kb on + strand, within CCNA_00719 at 774.703 kb on + strand, within CCNA_00719 at 774.743 kb on + strand, within CCNA_00719 at 774.743 kb on + strand, within CCNA_00719 at 774.743 kb on + strand, within CCNA_00719 at 774.756 kb on + strand, within CCNA_00719 at 774.764 kb on - strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.845 kb on + strand, within CCNA_00719 at 774.845 kb on + strand, within CCNA_00719 at 774.940 kb on + strand, within CCNA_00719 at 774.940 kb on + strand, within CCNA_00719 at 774.948 kb on - strand, within CCNA_00719 at 774.975 kb on - strand, within CCNA_00719
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 772,747 + +0.3 772,752 + -1.0 772,795 - +0.8 772,795 - +1.9 772,795 - +0.7 772,795 - +0.6 772,808 - CCNA_03930 0.17 +1.3 772,812 + CCNA_03930 0.21 -1.0 772,842 + CCNA_03930 0.50 +0.9 772,847 + CCNA_03930 0.54 +0.4 772,850 - CCNA_03930 0.57 +0.6 772,852 + +2.9 772,860 - CCNA_03930 0.67 +1.0 772,860 - CCNA_03930 0.67 +0.4 772,866 + CCNA_03930 0.72 -1.0 772,869 - CCNA_03930 0.75 +1.2 772,874 - CCNA_03930 0.80 +0.7 772,874 - CCNA_03930 0.80 +0.7 772,897 - -0.0 772,956 + +0.3 772,956 + +1.3 772,964 - -0.2 772,969 + +0.2 772,985 + +0.3 772,985 + +0.4 772,991 + +0.6 772,991 + +1.2 772,991 + -0.0 772,999 - +0.4 772,999 - +0.2 772,999 - +0.1 772,999 - -0.8 773,010 - +0.9 773,030 - +0.8 773,076 - +0.6 773,080 + +2.3 773,094 + -1.1 773,095 - +0.8 773,101 - +0.6 773,102 - +0.9 773,102 - +0.6 773,102 - +0.6 773,118 - -0.3 773,120 + +0.0 773,126 - +0.7 773,126 - +1.1 773,128 - +0.8 773,161 + -1.0 773,184 - +1.4 773,192 + -2.4 773,193 + +1.0 773,193 + -0.0 773,202 - +1.3 773,202 - +1.2 773,213 + +0.4 773,213 + -0.8 773,221 - +1.5 773,221 - +1.4 773,248 + +0.1 773,248 + -0.5 773,248 + +0.6 773,248 + +0.4 773,249 + -0.1 773,249 + +1.4 773,249 + -0.7 773,249 + -2.4 773,249 + +1.9 773,256 - +1.3 773,256 - +1.5 773,257 - +1.1 773,257 - +1.6 773,257 - +1.1 773,257 - +1.4 773,257 - +0.9 773,257 - +1.6 773,257 - +1.0 773,257 - +1.6 773,268 - +0.7 773,269 - +1.9 773,270 + -1.3 773,270 + -0.8 773,271 + +0.9 773,278 - +0.9 773,279 - +1.1 773,279 - +1.1 773,309 - +1.0 773,309 - +0.6 773,309 - +1.3 773,732 + -0.1 773,732 + -0.8 773,740 - +1.7 773,740 - +1.4 773,740 - +1.7 773,742 + -2.1 773,749 + -2.2 773,767 - CCNA_03932 0.13 -3.1 773,791 - CCNA_03932 0.23 +0.6 773,793 + CCNA_03932 0.24 -0.4 773,793 + CCNA_03932 0.24 -1.0 773,801 - CCNA_03932 0.27 +0.2 773,801 - CCNA_03932 0.27 -1.0 773,801 - CCNA_03932 0.27 -1.6 773,801 - CCNA_03932 0.27 -1.5 773,801 - CCNA_03932 0.27 -1.9 773,828 + CCNA_03932 0.37 -1.7 773,833 + CCNA_03932 0.39 -1.7 773,841 - CCNA_03932 0.42 -1.3 773,851 - CCNA_03932 0.46 -2.0 773,870 - CCNA_03932 0.54 -1.2 773,891 + CCNA_03932 0.62 -2.0 773,895 - CCNA_03932 0.64 -1.0 773,924 + CCNA_03932 0.75 -1.6 773,932 - CCNA_03932 0.78 -2.8 773,932 - CCNA_03932 0.78 -3.3 773,935 + CCNA_03932 0.79 -2.6 773,936 + CCNA_03932 0.80 -1.5 773,936 + CCNA_03932 0.80 -1.0 773,936 + CCNA_03932 0.80 -1.4 773,944 - CCNA_03932 0.83 -1.4 773,944 - CCNA_03932 0.83 -3.5 773,944 - CCNA_03932 0.83 -3.3 773,946 + CCNA_03932 0.84 -1.5 773,946 + CCNA_03932 0.84 -1.0 773,974 - -0.0 774,001 + -0.5 774,057 + CCNA_03933 0.15 -1.8 774,057 + CCNA_03933 0.15 -1.2 774,060 + CCNA_03933 0.16 -2.1 774,090 - CCNA_03933 0.28 -0.4 774,090 - CCNA_03933 0.28 +1.4 774,101 + CCNA_03933 0.32 -0.3 774,107 + CCNA_03933 0.34 -1.8 774,109 - CCNA_03933 0.35 +1.1 774,119 + CCNA_03933 0.39 -1.8 774,120 - CCNA_03933 0.39 +0.7 774,124 + CCNA_03933 0.41 -2.7 774,124 + CCNA_03933 0.41 -2.3 774,134 + CCNA_03933 0.44 +0.2 774,148 + CCNA_03933 0.50 +0.3 774,188 + CCNA_03933 0.65 -0.7 774,192 + CCNA_03933 0.67 -1.5 774,207 + CCNA_03933 0.72 -0.7 774,214 + CCNA_03933 0.75 -1.3 774,285 + -2.8 774,285 + -1.2 774,293 + -0.7 774,293 - +0.2 774,293 - +1.4 774,293 - +1.5 774,405 + -1.7 774,448 + -1.4 774,467 + +0.0 774,475 - -1.4 774,511 + +0.9 774,516 + -0.2 774,535 - CCNA_00719 0.11 +1.1 774,596 - CCNA_00719 0.16 -0.3 774,626 - CCNA_00719 0.19 -0.5 774,685 + CCNA_00719 0.23 +1.2 774,703 + CCNA_00719 0.25 -0.0 774,743 + CCNA_00719 0.28 -1.3 774,743 + CCNA_00719 0.28 +0.2 774,743 + CCNA_00719 0.28 -0.4 774,756 + CCNA_00719 0.29 +0.7 774,764 - CCNA_00719 0.30 +0.4 774,838 + CCNA_00719 0.36 -1.5 774,838 + CCNA_00719 0.36 +1.2 774,838 + CCNA_00719 0.36 +0.3 774,838 + CCNA_00719 0.36 +1.5 774,838 + CCNA_00719 0.36 -0.6 774,838 + CCNA_00719 0.36 -0.6 774,838 + CCNA_00719 0.36 -2.3 774,845 + CCNA_00719 0.36 -0.3 774,845 + CCNA_00719 0.36 +0.5 774,940 + CCNA_00719 0.44 +0.5 774,940 + CCNA_00719 0.44 +0.3 774,948 - CCNA_00719 0.45 -0.8 774,975 - CCNA_00719 0.47 -0.7
Or see this region's nucleotide sequence