Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00711 and CCNA_00712 are separated by 4 nucleotides CCNA_00712 and CCNA_03926 are separated by 39 nucleotides CCNA_03926 and CCNA_00714 are separated by 16 nucleotides CCNA_00714 and CCNA_03927 are separated by 88 nucleotides CCNA_03927 and CCNA_03928 are separated by 41 nucleotides CCNA_03928 and CCNA_00716 are separated by 63 nucleotides CCNA_00716 and CCNA_03929 are separated by 153 nucleotides CCNA_03929 and CCNA_00718 are separated by 52 nucleotides
CCNA_00711: CCNA_00711 - hypothetical protein, at 768,833 to 769,933
_00711
CCNA_00712: CCNA_00712 - hypothetical protein, at 769,938 to 770,252
_00712
CCNA_03926: CCNA_03926 - hypothetical protein, at 770,292 to 770,423
_03926
CCNA_00714: CCNA_00714 - hypothetical protein, at 770,440 to 770,709
_00714
CCNA_03927: CCNA_03927 - hypothetical protein, at 770,798 to 771,094
_03927
CCNA_03928: CCNA_03928 - hypothetical protein, at 771,136 to 771,327
_03928
CCNA_00716: CCNA_00716 - hypothetical protein, at 771,391 to 771,567
_00716
CCNA_03929: CCNA_03929 - hypothetical protein, at 771,721 to 771,834
_03929
CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783
_00718
Position (kb) 770
771
772 Strain fitness (log2 ratio) -2
-1
0
1
2 at 769.944 kb on - strand at 770.008 kb on - strand, within CCNA_00712 at 770.029 kb on + strand, within CCNA_00712 at 770.041 kb on + strand, within CCNA_00712 at 770.049 kb on - strand, within CCNA_00712 at 770.049 kb on - strand, within CCNA_00712 at 770.049 kb on - strand, within CCNA_00712 at 770.076 kb on - strand, within CCNA_00712 at 770.103 kb on + strand, within CCNA_00712 at 770.103 kb on + strand, within CCNA_00712 at 770.110 kb on + strand, within CCNA_00712 at 770.122 kb on + strand, within CCNA_00712 at 770.130 kb on - strand, within CCNA_00712 at 770.149 kb on + strand, within CCNA_00712 at 770.162 kb on - strand, within CCNA_00712 at 770.179 kb on + strand, within CCNA_00712 at 770.193 kb on - strand, within CCNA_00712 at 770.208 kb on - strand, within CCNA_00712 at 770.214 kb on - strand, within CCNA_00712 at 770.219 kb on - strand, within CCNA_00712 at 770.219 kb on - strand, within CCNA_00712 at 770.219 kb on - strand, within CCNA_00712 at 770.219 kb on - strand, within CCNA_00712 at 770.219 kb on - strand, within CCNA_00712 at 770.219 kb on - strand, within CCNA_00712 at 770.219 kb on - strand, within CCNA_00712 at 770.220 kb on + strand, within CCNA_00712 at 770.251 kb on - strand at 770.255 kb on + strand at 770.258 kb on + strand at 770.259 kb on + strand at 770.267 kb on - strand at 770.267 kb on - strand at 770.270 kb on + strand at 770.270 kb on + strand at 770.278 kb on - strand at 770.297 kb on - strand at 770.330 kb on - strand, within CCNA_03926 at 770.333 kb on + strand, within CCNA_03926 at 770.338 kb on + strand, within CCNA_03926 at 770.341 kb on - strand, within CCNA_03926 at 770.341 kb on - strand, within CCNA_03926 at 770.360 kb on - strand, within CCNA_03926 at 770.388 kb on + strand, within CCNA_03926 at 770.389 kb on - strand, within CCNA_03926 at 770.393 kb on + strand, within CCNA_03926 at 770.401 kb on - strand, within CCNA_03926 at 770.401 kb on - strand, within CCNA_03926 at 770.401 kb on - strand, within CCNA_03926 at 770.403 kb on + strand, within CCNA_03926 at 770.418 kb on - strand at 770.428 kb on - strand at 770.428 kb on - strand at 770.438 kb on - strand at 770.458 kb on - strand at 770.465 kb on - strand at 770.484 kb on - strand, within CCNA_00714 at 770.484 kb on - strand, within CCNA_00714 at 770.499 kb on - strand, within CCNA_00714 at 770.501 kb on + strand, within CCNA_00714 at 770.507 kb on + strand, within CCNA_00714 at 770.515 kb on - strand, within CCNA_00714 at 770.526 kb on + strand, within CCNA_00714 at 770.531 kb on + strand, within CCNA_00714 at 770.531 kb on + strand, within CCNA_00714 at 770.548 kb on + strand, within CCNA_00714 at 770.569 kb on + strand, within CCNA_00714 at 770.574 kb on + strand, within CCNA_00714 at 770.574 kb on + strand, within CCNA_00714 at 770.574 kb on + strand, within CCNA_00714 at 770.574 kb on + strand, within CCNA_00714 at 770.574 kb on + strand, within CCNA_00714 at 770.574 kb on + strand, within CCNA_00714 at 770.574 kb on + strand, within CCNA_00714 at 770.574 kb on + strand, within CCNA_00714 at 770.574 kb on + strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.582 kb on - strand, within CCNA_00714 at 770.588 kb on - strand, within CCNA_00714 at 770.603 kb on + strand, within CCNA_00714 at 770.608 kb on + strand, within CCNA_00714 at 770.619 kb on + strand, within CCNA_00714 at 770.624 kb on + strand, within CCNA_00714 at 770.627 kb on - strand, within CCNA_00714 at 770.627 kb on - strand, within CCNA_00714 at 770.627 kb on - strand, within CCNA_00714 at 770.627 kb on - strand, within CCNA_00714 at 770.629 kb on + strand, within CCNA_00714 at 770.632 kb on - strand, within CCNA_00714 at 770.638 kb on + strand, within CCNA_00714 at 770.638 kb on + strand, within CCNA_00714 at 770.654 kb on - strand, within CCNA_00714 at 770.682 kb on - strand, within CCNA_00714 at 770.698 kb on + strand at 770.709 kb on + strand at 770.768 kb on + strand at 770.789 kb on + strand at 770.794 kb on + strand at 770.833 kb on + strand, within CCNA_03927 at 770.833 kb on + strand, within CCNA_03927 at 770.993 kb on - strand, within CCNA_03927 at 771.000 kb on - strand, within CCNA_03927 at 771.024 kb on - strand, within CCNA_03927 at 771.031 kb on - strand, within CCNA_03927 at 771.033 kb on + strand, within CCNA_03927 at 771.041 kb on - strand, within CCNA_03927 at 771.109 kb on + strand at 771.109 kb on + strand at 771.114 kb on + strand at 771.133 kb on + strand at 771.133 kb on + strand at 771.135 kb on + strand at 771.135 kb on + strand at 771.143 kb on - strand at 771.176 kb on + strand, within CCNA_03928 at 771.181 kb on + strand, within CCNA_03928 at 771.184 kb on - strand, within CCNA_03928 at 771.189 kb on - strand, within CCNA_03928 at 771.194 kb on + strand, within CCNA_03928 at 771.213 kb on - strand, within CCNA_03928 at 771.213 kb on - strand, within CCNA_03928 at 771.213 kb on - strand, within CCNA_03928 at 771.232 kb on - strand, within CCNA_03928 at 771.232 kb on - strand, within CCNA_03928 at 771.232 kb on - strand, within CCNA_03928 at 771.232 kb on - strand, within CCNA_03928 at 771.239 kb on + strand, within CCNA_03928 at 771.259 kb on + strand, within CCNA_03928 at 771.260 kb on + strand, within CCNA_03928 at 771.260 kb on + strand, within CCNA_03928 at 771.273 kb on - strand, within CCNA_03928 at 771.277 kb on - strand, within CCNA_03928 at 771.277 kb on - strand, within CCNA_03928 at 771.277 kb on - strand, within CCNA_03928 at 771.306 kb on + strand, within CCNA_03928 at 771.316 kb on + strand at 771.336 kb on + strand at 771.344 kb on - strand at 771.344 kb on - strand at 771.373 kb on + strand at 771.378 kb on + strand at 771.378 kb on + strand at 771.381 kb on - strand at 771.381 kb on - strand at 771.386 kb on - strand at 771.396 kb on - strand at 771.397 kb on - strand at 771.406 kb on - strand at 771.406 kb on - strand at 771.427 kb on + strand, within CCNA_00716 at 771.428 kb on + strand, within CCNA_00716 at 771.431 kb on - strand, within CCNA_00716 at 771.448 kb on - strand, within CCNA_00716 at 771.449 kb on + strand, within CCNA_00716 at 771.449 kb on + strand, within CCNA_00716 at 771.457 kb on - strand, within CCNA_00716 at 771.457 kb on - strand, within CCNA_00716 at 771.475 kb on + strand, within CCNA_00716 at 771.475 kb on + strand, within CCNA_00716 at 771.540 kb on - strand, within CCNA_00716 at 771.560 kb on - strand at 771.564 kb on + strand at 771.653 kb on + strand at 771.653 kb on + strand at 771.653 kb on + strand at 771.653 kb on + strand at 771.661 kb on - strand at 771.682 kb on + strand at 771.683 kb on + strand at 771.696 kb on - strand at 771.696 kb on - strand at 771.719 kb on + strand at 771.719 kb on + strand at 771.719 kb on + strand at 771.727 kb on - strand at 771.727 kb on - strand at 771.727 kb on - strand at 771.727 kb on - strand at 771.732 kb on - strand at 771.773 kb on - strand, within CCNA_03929 at 771.806 kb on + strand, within CCNA_03929 at 771.810 kb on - strand, within CCNA_03929 at 771.840 kb on - strand at 771.852 kb on + strand at 771.869 kb on - strand at 771.875 kb on + strand at 771.886 kb on + strand at 771.893 kb on - strand at 771.893 kb on - strand at 771.901 kb on - strand at 771.913 kb on + strand at 771.921 kb on - strand at 771.940 kb on - strand at 771.962 kb on - strand at 771.962 kb on - strand at 771.963 kb on - strand at 771.976 kb on + strand at 771.984 kb on - strand, within CCNA_00718 at 771.984 kb on - strand, within CCNA_00718 at 771.984 kb on - strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.007 kb on + strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.020 kb on - strand, within CCNA_00718 at 772.066 kb on + strand, within CCNA_00718
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 769,944 - +0.4 770,008 - CCNA_00712 0.22 +0.0 770,029 + CCNA_00712 0.29 +0.6 770,041 + CCNA_00712 0.33 +0.5 770,049 - CCNA_00712 0.35 -0.2 770,049 - CCNA_00712 0.35 +0.3 770,049 - CCNA_00712 0.35 +1.2 770,076 - CCNA_00712 0.44 +0.0 770,103 + CCNA_00712 0.52 -1.3 770,103 + CCNA_00712 0.52 -0.7 770,110 + CCNA_00712 0.55 +0.3 770,122 + CCNA_00712 0.58 -0.3 770,130 - CCNA_00712 0.61 +0.4 770,149 + CCNA_00712 0.67 -0.8 770,162 - CCNA_00712 0.71 -0.3 770,179 + CCNA_00712 0.77 +0.3 770,193 - CCNA_00712 0.81 -0.4 770,208 - CCNA_00712 0.86 +0.3 770,214 - CCNA_00712 0.88 +0.6 770,219 - CCNA_00712 0.89 +0.3 770,219 - CCNA_00712 0.89 +0.2 770,219 - CCNA_00712 0.89 +0.6 770,219 - CCNA_00712 0.89 -1.0 770,219 - CCNA_00712 0.89 +0.5 770,219 - CCNA_00712 0.89 +0.8 770,219 - CCNA_00712 0.89 +0.9 770,220 + CCNA_00712 0.90 +0.6 770,251 - -0.4 770,255 + -1.2 770,258 + -0.5 770,259 + -1.0 770,267 - +0.7 770,267 - +1.5 770,270 + +1.5 770,270 + +0.6 770,278 - -0.3 770,297 - -0.1 770,330 - CCNA_03926 0.29 -1.3 770,333 + CCNA_03926 0.31 -0.8 770,338 + CCNA_03926 0.35 -0.7 770,341 - CCNA_03926 0.37 -0.2 770,341 - CCNA_03926 0.37 +0.2 770,360 - CCNA_03926 0.52 +0.6 770,388 + CCNA_03926 0.73 -1.7 770,389 - CCNA_03926 0.73 -0.8 770,393 + CCNA_03926 0.77 -1.2 770,401 - CCNA_03926 0.83 -0.8 770,401 - CCNA_03926 0.83 -0.0 770,401 - CCNA_03926 0.83 -0.0 770,403 + CCNA_03926 0.84 -1.7 770,418 - +0.4 770,428 - +0.7 770,428 - -0.5 770,438 - +1.0 770,458 - -0.1 770,465 - +0.6 770,484 - CCNA_00714 0.16 +0.4 770,484 - CCNA_00714 0.16 -0.5 770,499 - CCNA_00714 0.22 +0.5 770,501 + CCNA_00714 0.23 +1.9 770,507 + CCNA_00714 0.25 -1.4 770,515 - CCNA_00714 0.28 +0.8 770,526 + CCNA_00714 0.32 +1.9 770,531 + CCNA_00714 0.34 -0.5 770,531 + CCNA_00714 0.34 -1.9 770,548 + CCNA_00714 0.40 -0.9 770,569 + CCNA_00714 0.48 +0.2 770,574 + CCNA_00714 0.50 +1.0 770,574 + CCNA_00714 0.50 -1.6 770,574 + CCNA_00714 0.50 +0.6 770,574 + CCNA_00714 0.50 -0.1 770,574 + CCNA_00714 0.50 +0.3 770,574 + CCNA_00714 0.50 -1.2 770,574 + CCNA_00714 0.50 -1.0 770,574 + CCNA_00714 0.50 +0.3 770,574 + CCNA_00714 0.50 -1.1 770,582 - CCNA_00714 0.53 +0.6 770,582 - CCNA_00714 0.53 +0.1 770,582 - CCNA_00714 0.53 +0.8 770,582 - CCNA_00714 0.53 +0.9 770,582 - CCNA_00714 0.53 +0.2 770,582 - CCNA_00714 0.53 -0.7 770,582 - CCNA_00714 0.53 +0.5 770,582 - CCNA_00714 0.53 +0.9 770,582 - CCNA_00714 0.53 +0.1 770,582 - CCNA_00714 0.53 +0.5 770,582 - CCNA_00714 0.53 +0.9 770,582 - CCNA_00714 0.53 +0.1 770,582 - CCNA_00714 0.53 -0.9 770,582 - CCNA_00714 0.53 -0.3 770,582 - CCNA_00714 0.53 +1.0 770,582 - CCNA_00714 0.53 +0.3 770,588 - CCNA_00714 0.55 +1.1 770,603 + CCNA_00714 0.60 -0.2 770,608 + CCNA_00714 0.62 +0.9 770,619 + CCNA_00714 0.66 +1.0 770,624 + CCNA_00714 0.68 +0.5 770,627 - CCNA_00714 0.69 -2.6 770,627 - CCNA_00714 0.69 +0.1 770,627 - CCNA_00714 0.69 -1.5 770,627 - CCNA_00714 0.69 -1.0 770,629 + CCNA_00714 0.70 +0.1 770,632 - CCNA_00714 0.71 -0.9 770,638 + CCNA_00714 0.73 +1.1 770,638 + CCNA_00714 0.73 +0.7 770,654 - CCNA_00714 0.79 -0.6 770,682 - CCNA_00714 0.90 +0.5 770,698 + -0.0 770,709 + -1.4 770,768 + -2.1 770,789 + +0.9 770,794 + +0.9 770,833 + CCNA_03927 0.12 -0.5 770,833 + CCNA_03927 0.12 -0.3 770,993 - CCNA_03927 0.66 +0.6 771,000 - CCNA_03927 0.68 +1.9 771,024 - CCNA_03927 0.76 -0.7 771,031 - CCNA_03927 0.78 -0.9 771,033 + CCNA_03927 0.79 -1.1 771,041 - CCNA_03927 0.82 -1.4 771,109 + +0.8 771,109 + -1.2 771,114 + -0.9 771,133 + -0.1 771,133 + -0.2 771,135 + -1.1 771,135 + -0.9 771,143 - -0.0 771,176 + CCNA_03928 0.21 +0.6 771,181 + CCNA_03928 0.23 +1.5 771,184 - CCNA_03928 0.25 -0.6 771,189 - CCNA_03928 0.28 +1.0 771,194 + CCNA_03928 0.30 -2.5 771,213 - CCNA_03928 0.40 -0.1 771,213 - CCNA_03928 0.40 +0.3 771,213 - CCNA_03928 0.40 -0.1 771,232 - CCNA_03928 0.50 -1.0 771,232 - CCNA_03928 0.50 -0.7 771,232 - CCNA_03928 0.50 -0.2 771,232 - CCNA_03928 0.50 +1.1 771,239 + CCNA_03928 0.54 -0.5 771,259 + CCNA_03928 0.64 -0.0 771,260 + CCNA_03928 0.65 -1.1 771,260 + CCNA_03928 0.65 -0.5 771,273 - CCNA_03928 0.71 -1.4 771,277 - CCNA_03928 0.73 -0.5 771,277 - CCNA_03928 0.73 -0.1 771,277 - CCNA_03928 0.73 -1.4 771,306 + CCNA_03928 0.89 +0.8 771,316 + +0.5 771,336 + -0.8 771,344 - -0.4 771,344 - +0.2 771,373 + -1.1 771,378 + -0.5 771,378 + -0.1 771,381 - +1.0 771,381 - +1.3 771,386 - +0.3 771,396 - +0.2 771,397 - +0.9 771,406 - +0.6 771,406 - +0.2 771,427 + CCNA_00716 0.20 +0.6 771,428 + CCNA_00716 0.21 -0.4 771,431 - CCNA_00716 0.23 -0.0 771,448 - CCNA_00716 0.32 +0.9 771,449 + CCNA_00716 0.33 +2.0 771,449 + CCNA_00716 0.33 +2.0 771,457 - CCNA_00716 0.37 +1.0 771,457 - CCNA_00716 0.37 -0.5 771,475 + CCNA_00716 0.47 -1.2 771,475 + CCNA_00716 0.47 -0.2 771,540 - CCNA_00716 0.84 +0.4 771,560 - +0.2 771,564 + +0.3 771,653 + -0.2 771,653 + +0.3 771,653 + -0.3 771,653 + -1.6 771,661 - +1.6 771,682 + -0.1 771,683 + -0.1 771,696 - +0.8 771,696 - +0.3 771,719 + -1.4 771,719 + -1.7 771,719 + +1.2 771,727 - +0.7 771,727 - -0.0 771,727 - -0.3 771,727 - +1.5 771,732 - -0.0 771,773 - CCNA_03929 0.46 +0.3 771,806 + CCNA_03929 0.75 -0.0 771,810 - CCNA_03929 0.78 -1.6 771,840 - +0.2 771,852 + -0.6 771,869 - +1.1 771,875 + -1.1 771,886 + +1.3 771,893 - -0.7 771,893 - +0.4 771,901 - -0.6 771,913 + -0.1 771,921 - -0.2 771,940 - -0.1 771,962 - -1.1 771,962 - +0.5 771,963 - +0.3 771,976 + -0.2 771,984 - CCNA_00718 0.11 -0.4 771,984 - CCNA_00718 0.11 +0.2 771,984 - CCNA_00718 0.11 +0.7 772,005 + CCNA_00718 0.13 +0.9 772,005 + CCNA_00718 0.13 +0.8 772,005 + CCNA_00718 0.13 -0.3 772,005 + CCNA_00718 0.13 -2.6 772,005 + CCNA_00718 0.13 -0.8 772,005 + CCNA_00718 0.13 +1.1 772,007 + CCNA_00718 0.13 -0.1 772,013 - CCNA_00718 0.14 +1.5 772,013 - CCNA_00718 0.14 -0.9 772,013 - CCNA_00718 0.14 -0.7 772,013 - CCNA_00718 0.14 -1.0 772,013 - CCNA_00718 0.14 +0.7 772,013 - CCNA_00718 0.14 +0.4 772,013 - CCNA_00718 0.14 +1.1 772,013 - CCNA_00718 0.14 -0.0 772,020 - CCNA_00718 0.15 +0.5 772,066 + CCNA_00718 0.20 +0.6
Or see this region's nucleotide sequence