Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03201

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
3,360,740	+		CCNA_03200	0.48	-0.4
3,360,754	+		CCNA_03200	0.49	-1.7
3,360,754	+		CCNA_03200	0.49	+1.3
3,360,754	+		CCNA_03200	0.49	+0.4
3,360,754	-		CCNA_03200	0.49	-0.5
3,360,762	-		CCNA_03200	0.49	+0.2
3,360,762	-		CCNA_03200	0.49	-0.2
3,360,774	+		CCNA_03200	0.50	+0.5
3,360,774	+		CCNA_03200	0.50	-0.5
3,360,782	-		CCNA_03200	0.51	-0.0
3,360,782	-		CCNA_03200	0.51	-0.1
3,360,789	+		CCNA_03200	0.51	+0.5
3,360,797	-		CCNA_03200	0.51	-0.5
3,360,797	-		CCNA_03200	0.51	-0.3
3,360,805	-		CCNA_03200	0.52	+1.5
3,360,810	-		CCNA_03200	0.52	-0.5
3,360,853	+		CCNA_03200	0.55	-1.8
3,360,853	+		CCNA_03200	0.55	-1.8
3,360,861	-		CCNA_03200	0.55	+1.5
3,360,861	-		CCNA_03200	0.55	-0.2
3,360,861	-		CCNA_03200	0.55	+0.6
3,360,861	-		CCNA_03200	0.55	-0.2
3,360,861	-		CCNA_03200	0.55	+0.7
3,360,861	-		CCNA_03200	0.55	-0.1
3,360,863	+		CCNA_03200	0.55	-1.4
3,360,863	+		CCNA_03200	0.55	+1.9
3,360,863	+		CCNA_03200	0.55	+0.5
3,360,871	-		CCNA_03200	0.56	+0.5
3,360,871	-		CCNA_03200	0.56	+0.2
3,360,871	-		CCNA_03200	0.56	-0.6
3,360,871	-		CCNA_03200	0.56	-0.4
3,360,871	-		CCNA_03200	0.56	+0.2
3,360,882	-		CCNA_03200	0.56	-0.1
3,360,916	-		CCNA_03200	0.58	+0.0
3,360,955	-		CCNA_03200	0.61	+1.2
3,360,963	+		CCNA_03200	0.61	-0.5
3,360,963	+		CCNA_03200	0.61	-1.2
3,360,964	+		CCNA_03200	0.61	-1.0
3,360,970	-		CCNA_03200	0.61	-0.6
3,360,972	-		CCNA_03200	0.62	+2.7
3,360,972	-		CCNA_03200	0.62	-0.8
3,360,972	-		CCNA_03200	0.62	+0.3
3,360,975	+		CCNA_03200	0.62	+1.0
3,361,004	+		CCNA_03200	0.63	-0.6
3,361,004	+		CCNA_03200	0.63	+0.3
3,361,004	+		CCNA_03200	0.63	-0.6
3,361,004	+		CCNA_03200	0.63	+0.3
3,361,012	-		CCNA_03200	0.64	+0.4
3,361,056	-		CCNA_03200	0.66	-0.8
3,361,069	+		CCNA_03200	0.67	-1.7
3,361,100	-		CCNA_03200	0.69	-0.0
3,361,162	-		CCNA_03200	0.73	-0.1
3,361,164	+		CCNA_03200	0.73	+1.3
3,361,167	-		CCNA_03200	0.73	-0.0
3,361,211	-		CCNA_03200	0.75	+0.7
3,361,228	+		CCNA_03200	0.76	+0.3
3,361,252	-		CCNA_03200	0.78	+0.2
3,361,254	+		CCNA_03200	0.78	+0.3
3,361,283	-		CCNA_03200	0.80	-0.4
3,361,283	-		CCNA_03200	0.80	-0.3
3,361,283	-		CCNA_03200	0.80	+0.3
3,361,299	+		CCNA_03200	0.81	-0.1
3,361,307	-		CCNA_03200	0.81	+1.3
3,361,330	-		CCNA_03200	0.82	+0.5
3,361,335	-		CCNA_03200	0.83	-0.1
3,361,340	-		CCNA_03200	0.83	+0.9
3,361,377	+		CCNA_03200	0.85	-1.5
3,361,377	+		CCNA_03200	0.85	+1.4
3,361,385	-		CCNA_03200	0.86	+0.4
3,361,385	-		CCNA_03200	0.86	+0.6
3,361,385	-		CCNA_03200	0.86	+1.0
3,361,386	-		CCNA_03200	0.86	+1.0
3,361,413	+		CCNA_03200	0.87	-1.4
3,361,418	+		CCNA_03200	0.87	-0.7
3,361,418	+		CCNA_03200	0.87	-0.4
3,361,418	+		CCNA_03200	0.87	-1.8
3,361,426	-		CCNA_03200	0.88	+0.2
3,361,482	-				+0.2
3,361,495	-				+0.3
3,361,504	+				-0.5
3,361,564	-				+0.1
3,361,575	-				+0.1
3,361,579	-				+0.7
3,361,581	-				+0.8
3,361,590	-				+0.6
3,361,628	+				-0.4
3,361,637	-				+0.0
3,361,638	-				-1.5
3,361,692	+				-2.6
3,361,700	-				+1.6
3,361,761	-				-0.3
3,361,781	-				+2.0
3,361,781	-				+0.7
3,361,781	-				+0.7
3,361,808	-				+0.1
3,361,808	-				+0.6
3,361,836	-				+0.3
3,362,006	-		CCNA_03201	0.21	-0.0
3,362,043	-				+4.6
3,362,155	-		CCNA_03201	0.33	+0.1
3,362,189	-		CCNA_03201	0.36	+1.5
3,362,215	+		CCNA_03201	0.38	-0.4
3,362,224	-		CCNA_03201	0.38	+0.0
3,362,224	-		CCNA_03201	0.38	-0.3
3,362,224	-		CCNA_03201	0.38	-1.9
3,362,228	+		CCNA_03201	0.39	-0.0
3,362,229	-		CCNA_03201	0.39	+0.5
3,362,238	+		CCNA_03201	0.39	-0.6
3,362,284	-		CCNA_03201	0.43	-0.3
3,362,327	-		CCNA_03201	0.46	-0.6
3,362,344	-		CCNA_03201	0.48	-0.3
3,362,360	+		CCNA_03201	0.49	-0.2
3,362,370	-		CCNA_03201	0.50	-2.3
3,362,416	-				+0.7
3,362,423	+		CCNA_03201	0.54	-1.6
3,362,426	-		CCNA_03201	0.54	-1.4
3,362,431	-		CCNA_03201	0.54	+2.3
3,362,493	+		CCNA_03201	0.59	+0.5
3,362,501	-		CCNA_03201	0.60	-0.2
3,362,563	-		CCNA_03201	0.65	-1.1
3,362,608	-		CCNA_03201	0.68	-1.1
3,362,755	-		CCNA_03201	0.79	+2.3
3,362,841	-		CCNA_03201	0.86	+0.3
3,362,854	-		CCNA_03201	0.87	+0.3
3,362,872	-		CCNA_03201	0.89	+0.1
3,362,963	+				-0.4
3,362,968	+				+1.0
3,363,079	+				+1.7
3,363,120	-				+0.8
3,363,135	+				-0.9
3,363,154	-				+0.7
3,363,154	-				-0.2
3,363,154	-				+1.6
3,363,172	+				-0.2
3,363,224	+		CCNA_03202	0.14	-0.1
3,363,224	+		CCNA_03202	0.14	+0.2
3,363,224	+		CCNA_03202	0.14	-2.0
3,363,224	+		CCNA_03202	0.14	-1.0
3,363,224	+		CCNA_03202	0.14	-0.6
3,363,224	+		CCNA_03202	0.14	-1.0
3,363,224	+		CCNA_03202	0.14	+1.0
3,363,224	+		CCNA_03202	0.14	-0.4
3,363,224	+		CCNA_03202	0.14	-0.7
3,363,224	+		CCNA_03202	0.14	-0.5
3,363,224	+		CCNA_03202	0.14	-0.0
3,363,224	+		CCNA_03202	0.14	+1.2
3,363,224	+		CCNA_03202	0.14	+1.3
3,363,224	+		CCNA_03202	0.14	+2.0
3,363,224	+		CCNA_03202	0.14	-1.3
3,363,224	+		CCNA_03202	0.14	-0.5
3,363,224	+		CCNA_03202	0.14	+0.3
3,363,224	+		CCNA_03202	0.14	-0.2
3,363,224	+		CCNA_03202	0.14	-1.3
3,363,232	-		CCNA_03202	0.15	-1.7
3,363,232	-		CCNA_03202	0.15	+0.1
3,363,232	-		CCNA_03202	0.15	+1.4
3,363,232	-		CCNA_03202	0.15	+1.0
3,363,232	-		CCNA_03202	0.15	-2.2
3,363,232	-		CCNA_03202	0.15	+1.3
3,363,232	-		CCNA_03202	0.15	-0.4
3,363,232	-		CCNA_03202	0.15	+1.5
3,363,232	-		CCNA_03202	0.15	+0.5
3,363,232	-		CCNA_03202	0.15	-0.3
3,363,232	-		CCNA_03202	0.15	+0.3
3,363,232	-		CCNA_03202	0.15	-0.7
3,363,232	-		CCNA_03202	0.15	-2.3
3,363,232	-		CCNA_03202	0.15	-0.1
3,363,232	-		CCNA_03202	0.15	+1.0
3,363,232	-		CCNA_03202	0.15	+0.1
3,363,232	-		CCNA_03202	0.15	+2.6
3,363,232	-		CCNA_03202	0.15	+0.1
3,363,232	-		CCNA_03202	0.15	-0.3
3,363,232	-		CCNA_03202	0.15	-0.4
3,363,232	-		CCNA_03202	0.15	-0.4
3,363,232	-		CCNA_03202	0.15	+2.1
3,363,232	-		CCNA_03202	0.15	-0.3
3,363,232	-		CCNA_03202	0.15	+0.2
3,363,232	-		CCNA_03202	0.15	+1.6
3,363,232	-		CCNA_03202	0.15	+0.8
3,363,232	-		CCNA_03202	0.15	+0.6
3,363,240	-		CCNA_03202	0.16	+1.5
3,363,247	-		CCNA_03202	0.17	-1.2
3,363,266	+		CCNA_03202	0.20	+1.0
3,363,274	-		CCNA_03202	0.22	+2.5
3,363,289	-		CCNA_03202	0.24	+0.1
3,363,328	-		CCNA_03202	0.30	-0.3
3,363,331	+		CCNA_03202	0.31	+0.9
3,363,333	-		CCNA_03202	0.31	+0.1
3,363,348	+		CCNA_03202	0.33	+0.7
3,363,354	-		CCNA_03202	0.34	+0.7
3,363,397	-		CCNA_03202	0.41	+0.0
3,363,399	+		CCNA_03202	0.41	+0.5
3,363,401	+		CCNA_03202	0.42	-0.2
3,363,401	+		CCNA_03202	0.42	-0.2
3,363,401	+		CCNA_03202	0.42	+0.1
3,363,401	+		CCNA_03202	0.42	+0.7
3,363,401	+		CCNA_03202	0.42	-0.6
3,363,401	+		CCNA_03202	0.42	-0.9
3,363,401	+		CCNA_03202	0.42	+0.5
3,363,401	+		CCNA_03202	0.42	-1.6
3,363,401	+		CCNA_03202	0.42	-0.4
3,363,409	-		CCNA_03202	0.43	+0.1
3,363,409	-		CCNA_03202	0.43	-0.1
3,363,409	-		CCNA_03202	0.43	+0.0
3,363,409	-		CCNA_03202	0.43	+1.5
3,363,409	-		CCNA_03202	0.43	+0.6
3,363,409	-		CCNA_03202	0.43	-0.4
3,363,409	-		CCNA_03202	0.43	-0.4
3,363,409	-		CCNA_03202	0.43	-1.7
3,363,409	-		CCNA_03202	0.43	+0.9
3,363,409	-		CCNA_03202	0.43	+0.2
3,363,409	-		CCNA_03202	0.43	-1.0
3,363,409	-		CCNA_03202	0.43	-1.7
3,363,409	-		CCNA_03202	0.43	+0.7
3,363,409	-		CCNA_03202	0.43	+0.3
3,363,409	-		CCNA_03202	0.43	+1.4
3,363,409	-		CCNA_03202	0.43	-0.4
3,363,409	-		CCNA_03202	0.43	+0.5
3,363,409	-		CCNA_03202	0.43	-0.5
3,363,409	-		CCNA_03202	0.43	+0.4
3,363,409	-		CCNA_03202	0.43	+0.7
3,363,414	-		CCNA_03202	0.44	+0.6
3,363,494	-		CCNA_03202	0.57	+1.0
3,363,494	-		CCNA_03202	0.57	-0.5
3,363,495	-		CCNA_03202	0.57	+1.2
3,363,516	-		CCNA_03202	0.60	-0.4
3,363,516	-		CCNA_03202	0.60	+1.4
3,363,521	-		CCNA_03202	0.61	+0.4
3,363,521	-		CCNA_03202	0.61	+0.5
3,363,528	-		CCNA_03202	0.62	-1.0
3,363,529	-		CCNA_03202	0.62	+0.1
3,363,580	-		CCNA_03202	0.70	+0.4
3,363,582	+		CCNA_03202	0.71	-1.0
3,363,585	-		CCNA_03202	0.71	-0.4
3,363,632	+		CCNA_03202	0.79	+1.6
3,363,673	+		CCNA_03202	0.85	-1.5
3,363,688	+		CCNA_03202	0.88	-1.5
3,363,688	+				+2.0
3,363,696	-		CCNA_03202	0.89	-0.4
3,363,696	-		CCNA_03202	0.89	-0.6
3,363,723	+				+0.4
3,363,723	+				-1.7
3,363,723	+				-1.4
3,363,723	+				-0.8
3,363,731	-				-0.4
3,363,731	-				-0.0
3,363,731	-				+0.2
3,363,731	-				+0.1
3,363,731	-				+0.4
3,363,731	-				+0.9
3,363,731	-				+1.5
3,363,731	-				-0.6
3,363,731	-				+0.9
3,363,731	-				+1.1
3,363,731	-				-0.4
3,363,741	-				+1.2
3,363,769	+				+0.1
3,363,769	+				-1.9
3,363,774	+				-1.3
3,363,777	-				+0.4
3,363,777	-				-1.1
3,363,777	-				+0.3
3,363,777	-				-0.2
3,363,777	-				-0.0
3,363,777	-				+0.5
3,363,777	-				-0.3
3,363,777	-				+0.4
3,363,779	+				-0.9
3,363,779	+				+1.5
3,363,779	+				-0.7
3,363,779	+				-1.0
3,363,779	+				-0.6
3,363,779	+				+0.7
3,363,779	+				-1.8
3,363,787	-				-0.0
3,363,787	-				-0.8
3,363,787	-				+0.7
3,363,787	-				+1.0
3,363,787	-				-1.5
3,363,787	-				-1.2
3,363,787	-				+0.2
3,363,787	-				-1.9
3,363,787	-				-0.5
3,363,791	+				+0.3
3,363,791	+				+0.7
3,363,791	+				+0.3
3,363,799	-				+0.8
3,363,808	+				-0.0
3,363,815	+				-1.6
3,363,826	+				-0.7
3,363,833	-				-2.0
3,363,851	+				-0.1
3,363,852	+				-2.9
3,363,858	+				-0.4
3,363,858	+				-0.0
3,363,859	-				-0.2
3,363,859	-				+0.9
3,363,859	-				-2.8
3,363,860	-				+0.8
3,363,866	-				+0.3
3,363,866	-				-2.2
3,363,866	-				-0.3
3,363,890	-				+0.2
3,363,901	+				-0.7
3,363,903	+				+1.1
3,363,904	-				-0.3
3,363,909	-				+2.3
3,363,978	+		CCNA_03203	0.12	+1.5
3,363,984	+		CCNA_03203	0.12	+0.9
3,363,984	+		CCNA_03203	0.12	+0.3
3,363,984	+		CCNA_03203	0.12	+0.8
3,363,985	+		CCNA_03203	0.13	-0.6
3,363,992	+		CCNA_03203	0.13	-0.9
3,363,992	+		CCNA_03203	0.13	-0.4
3,363,992	-		CCNA_03203	0.13	-0.2
3,363,993	-		CCNA_03203	0.13	-1.0
3,363,993	-		CCNA_03203	0.13	+0.2
3,363,993	-		CCNA_03203	0.13	+0.1
3,364,017	-		CCNA_03203	0.16	-0.6