Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02684

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
2,836,436	-		CCNA_02683	0.34	+0.7
2,836,443	+		CCNA_02683	0.35	-2.0
2,836,450	-		CCNA_02683	0.35	-0.7
2,836,462	+		CCNA_02683	0.36	-0.6
2,836,462	+		CCNA_02683	0.36	+0.6
2,836,462	+		CCNA_02683	0.36	-0.5
2,836,470	-		CCNA_02683	0.37	+0.3
2,836,470	-		CCNA_02683	0.37	+0.5
2,836,507	+		CCNA_02683	0.39	+0.5
2,836,514	-		CCNA_02683	0.40	-0.5
2,836,573	+		CCNA_02683	0.44	-1.3
2,836,573	+		CCNA_02683	0.44	+1.0
2,836,631	+		CCNA_02683	0.49	+0.5
2,836,635	-		CCNA_02683	0.49	-1.5
2,836,645	-		CCNA_02683	0.50	+0.3
2,836,683	+		CCNA_02683	0.53	-0.2
2,836,730	+		CCNA_02683	0.56	-0.2
2,836,777	+		CCNA_02683	0.60	-1.4
2,836,856	-		CCNA_02683	0.66	+2.3
2,836,898	+		CCNA_02683	0.69	-0.8
2,836,901	-		CCNA_02683	0.69	-1.9
2,836,906	-		CCNA_02683	0.69	-1.4
2,836,906	-				+3.3
2,836,906	-		CCNA_02683	0.69	+1.5
2,836,907	-		CCNA_02683	0.69	-1.5
2,836,925	-		CCNA_02683	0.71	-0.7
2,836,925	-		CCNA_02683	0.71	+0.5
2,837,019	+		CCNA_02683	0.78	-0.0
2,837,098	+		CCNA_02683	0.84	-1.6
2,837,106	-		CCNA_02683	0.84	+0.1
2,837,125	+		CCNA_02683	0.86	-1.4
2,837,132	-		CCNA_02683	0.86	-1.4
2,837,146	-		CCNA_02683	0.87	-1.9
2,837,153	-		CCNA_02683	0.88	-2.0
2,837,173	+		CCNA_02683	0.89	-1.1
2,837,203	+				+0.6
2,837,203	+				+1.3
2,837,211	-				-0.4
2,837,219	+				-0.9
2,837,221	-				-1.5
2,837,255	+				+0.5
2,837,265	-				+1.3
2,837,272	-				-1.0
2,837,279	+				-1.3
2,837,292	+				-2.7
2,837,297	+				-0.6
2,837,305	-				+0.3
2,837,307	+				+0.7
2,837,315	-				+0.1
2,837,315	-				-1.0
2,837,315	-				+0.3
2,837,341	-				-0.9
2,837,349	+				+0.2
2,837,404	-				+0.1
2,837,416	+				+0.7
2,837,441	+				+1.0
2,837,441	+				-1.4
2,837,449	-				+1.7
2,837,485	+				-1.0
2,837,488	-				-2.2
2,837,510	-				+0.6
2,837,513	+				-1.8
2,837,547	+		CCNA_02684	0.11	+1.0
2,837,552	+		CCNA_02684	0.11	-0.3
2,837,562	+		CCNA_02684	0.12	-1.6
2,837,562	+		CCNA_02684	0.12	-2.1
2,837,562	+		CCNA_02684	0.12	-1.5
2,837,570	-		CCNA_02684	0.13	-1.4
2,837,570	-		CCNA_02684	0.13	-0.7
2,837,570	-		CCNA_02684	0.13	+0.3
2,837,570	-		CCNA_02684	0.13	-0.7
2,837,570	-		CCNA_02684	0.13	-0.5
2,837,582	-		CCNA_02684	0.14	-1.2
2,837,625	+		CCNA_02684	0.18	-0.4
2,837,630	+		CCNA_02684	0.19	+1.6
2,837,630	+		CCNA_02684	0.19	-1.8
2,837,632	+		CCNA_02684	0.19	-0.2
2,837,632	+		CCNA_02684	0.19	-1.0
2,837,632	+		CCNA_02684	0.19	+0.4
2,837,632	+		CCNA_02684	0.19	-0.5
2,837,632	+		CCNA_02684	0.19	-0.2
2,837,638	-		CCNA_02684	0.20	-0.7
2,837,640	-		CCNA_02684	0.20	-1.5
2,837,640	-		CCNA_02684	0.20	+0.8
2,837,640	-		CCNA_02684	0.20	-1.0
2,837,664	+		CCNA_02684	0.22	-1.2
2,837,676	+		CCNA_02684	0.23	-0.1
2,837,676	+		CCNA_02684	0.23	+0.6
2,837,676	+		CCNA_02684	0.23	+0.7
2,837,684	-		CCNA_02684	0.24	-1.2
2,837,723	+		CCNA_02684	0.28	+2.0
2,837,729	+		CCNA_02684	0.28	-1.3
2,837,731	-				+2.3
2,837,769	+		CCNA_02684	0.32	-0.3
2,837,769	+		CCNA_02684	0.32	+0.8
2,837,777	-		CCNA_02684	0.33	-0.6
2,837,777	-		CCNA_02684	0.33	-0.9
2,837,777	-		CCNA_02684	0.33	-1.5
2,837,809	-		CCNA_02684	0.36	-0.5
2,837,833	-		CCNA_02684	0.38	+0.7
2,837,933	+		CCNA_02684	0.48	+1.7
2,837,960	-		CCNA_02684	0.50	-0.9
2,837,971	-		CCNA_02684	0.52	+1.3
2,838,000	+		CCNA_02684	0.54	-1.2
2,838,027	-		CCNA_02684	0.57	-0.6
2,838,036	+		CCNA_02684	0.58	-2.4
2,838,044	-		CCNA_02684	0.59	-0.3
2,838,063	-		CCNA_02684	0.60	+1.0
2,838,091	+		CCNA_02684	0.63	-1.0
2,838,150	+		CCNA_02684	0.69	-0.2
2,838,158	-		CCNA_02684	0.69	+2.1
2,838,187	-		CCNA_02684	0.72	-0.3
2,838,192	-		CCNA_02684	0.73	+0.2
2,838,208	-		CCNA_02684	0.74	-1.4
2,838,213	-		CCNA_02684	0.75	-0.3
2,838,225	+		CCNA_02684	0.76	-1.4
2,838,233	-		CCNA_02684	0.77	-1.0
2,838,273	-		CCNA_02684	0.80	+0.5
2,838,312	+		CCNA_02684	0.84	-0.6
2,838,329	+		CCNA_02684	0.86	-0.0
2,838,329	+		CCNA_02684	0.86	-0.7
2,838,337	-		CCNA_02684	0.87	+0.9
2,838,369	+		CCNA_02684	0.90	+1.7
2,838,377	-				-1.4
2,838,388	+				-2.0
2,838,417	+				-1.2
2,838,427	-				+1.4
2,838,466	-				-2.0
2,838,466	-				-1.6
2,838,514	-		CCNA_02685	0.10	-1.0
2,838,531	+		CCNA_02685	0.14	+1.4
2,838,558	+		CCNA_02685	0.21	+0.4
2,838,629	-		CCNA_02685	0.38	+0.7
2,838,666	+		CCNA_02685	0.47	-1.9
2,838,674	-		CCNA_02685	0.49	-1.0
2,838,674	-		CCNA_02685	0.49	+0.2
2,838,684	-		CCNA_02685	0.52	-1.7
2,838,741	+		CCNA_02685	0.66	+0.2
2,838,741	+		CCNA_02685	0.66	-0.6
2,838,741	+		CCNA_02685	0.66	+1.0
2,838,741	+		CCNA_02685	0.66	-1.2
2,838,741	+		CCNA_02685	0.66	-1.8
2,838,741	+		CCNA_02685	0.66	-0.9
2,838,749	-		CCNA_02685	0.68	-0.5
2,838,749	-		CCNA_02685	0.68	+0.3
2,838,761	-		CCNA_02685	0.71	-1.4
2,838,819	-		CCNA_02685	0.85	-0.0
2,838,919	+				+0.1
2,838,919	+				-0.4
2,838,936	+				-0.7
2,838,949	-				-0.7
2,839,110	-				-0.6
2,839,110	-				+0.5
2,839,116	+				+2.1
2,839,116	+				+0.4
2,839,177	+				-1.8
2,839,177	+				-0.6
2,839,177	+				+0.2
2,839,177	+				-0.3
2,839,177	+				-0.3
2,839,177	+				-0.8
2,839,177	+				-0.2
2,839,177	+				+0.3
2,839,191	+		CCNA_02686	0.11	-0.5
2,839,204	+		CCNA_02686	0.12	+1.2
2,839,210	+		CCNA_02686	0.12	-0.2
2,839,253	+		CCNA_02686	0.15	+0.8
2,839,285	+		CCNA_02686	0.18	-0.8
2,839,285	-		CCNA_02686	0.18	-1.5
2,839,293	-		CCNA_02686	0.19	-0.6
2,839,293	-		CCNA_02686	0.19	-1.1
2,839,303	+		CCNA_02686	0.19	-0.4
2,839,303	+		CCNA_02686	0.19	-0.4
2,839,311	-		CCNA_02686	0.20	-0.5
2,839,311	-		CCNA_02686	0.20	-1.5
2,839,311	-		CCNA_02686	0.20	+0.3
2,839,323	-		CCNA_02686	0.21	-0.9
2,839,350	-		CCNA_02686	0.23	-1.5
2,839,369	-		CCNA_02686	0.25	-0.8
2,839,371	+		CCNA_02686	0.25	+0.4
2,839,379	-		CCNA_02686	0.25	+0.3
2,839,383	+		CCNA_02686	0.26	+1.4
2,839,407	-		CCNA_02686	0.27	+0.7
2,839,426	-		CCNA_02686	0.29	-0.8