Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02658

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
2,809,834	+		CCNA_02656	0.57	-0.9
2,809,842	-		CCNA_02656	0.58	-0.0
2,809,847	-		CCNA_02656	0.59	+2.1
2,809,858	+		CCNA_02656	0.60	-0.6
2,809,867	+		CCNA_02656	0.61	-0.1
2,809,877	-		CCNA_02656	0.63	-0.3
2,809,894	+		CCNA_02656	0.65	-1.0
2,809,940	+		CCNA_02656	0.70	-1.7
2,809,948	-		CCNA_02656	0.71	-1.3
2,809,948	-		CCNA_02656	0.71	+0.2
2,809,956	+		CCNA_02656	0.72	-1.1
2,809,957	+		CCNA_02656	0.72	+1.1
2,809,964	-		CCNA_02656	0.73	-0.9
2,809,964	-		CCNA_02656	0.73	+0.6
2,809,993	-		CCNA_02656	0.77	-0.9
2,810,055	+		CCNA_02656	0.85	+0.1
2,810,063	-		CCNA_02656	0.85	-2.3
2,810,144	+				+1.2
2,810,153	-				+1.0
2,810,190	+				-1.6
2,810,208	-				+0.3
2,810,225	-				+1.1
2,810,225	-				+1.5
2,810,250	+				+1.6
2,810,252	-				+0.7
2,810,275	-		CCNA_02657	0.14	-0.0
2,810,284	+		CCNA_02657	0.15	-0.5
2,810,299	-		CCNA_02657	0.18	+0.9
2,810,310	+		CCNA_02657	0.20	-0.2
2,810,312	-		CCNA_02657	0.20	+0.2
2,810,312	-		CCNA_02657	0.20	-0.4
2,810,317	+		CCNA_02657	0.21	-2.5
2,810,317	+		CCNA_02657	0.21	-0.0
2,810,324	-		CCNA_02657	0.22	+0.2
2,810,351	-		CCNA_02657	0.26	+1.0
2,810,403	+				+1.6
2,810,559	+		CCNA_02657	0.61	-0.5
2,810,591	+		CCNA_02657	0.67	+1.1
2,810,591	+		CCNA_02657	0.67	+0.9
2,810,596	+		CCNA_02657	0.68	-0.4
2,810,612	-		CCNA_02657	0.70	+0.3
2,810,622	+		CCNA_02657	0.72	-0.7
2,810,641	-		CCNA_02657	0.75	-0.6
2,810,642	-		CCNA_02657	0.75	+0.4
2,810,672	-		CCNA_02657	0.80	+0.4
2,810,675	+		CCNA_02657	0.81	-2.6
2,810,683	-		CCNA_02657	0.82	+1.2
2,810,683	-		CCNA_02657	0.82	+0.3
2,810,687	+		CCNA_02657	0.83	-0.0
2,810,777	+				-0.7
2,810,787	-				+0.8
2,810,801	+				+1.0
2,810,806	+				+2.3
2,810,806	+				+1.8
2,810,806	+				+2.1
2,810,806	+				+1.6
2,810,807	-				+1.3
2,810,807	-				+1.3
2,810,807	-				+0.2
2,810,807	-				+1.2
2,810,807	-				-0.2
2,810,807	-				-0.2
2,810,809	-				+1.6
2,810,809	-				+2.0
2,810,841	-				+1.0
2,810,904	-		CCNA_02658	0.14	-1.4
2,810,946	+		CCNA_02658	0.19	-1.3
2,810,954	-		CCNA_02658	0.20	+0.0
2,810,996	-		CCNA_02658	0.26	-0.4
2,811,000	-		CCNA_02658	0.26	+0.4
2,811,001	-		CCNA_02658	0.26	+2.2
2,811,057	+		CCNA_02658	0.33	-1.3
2,811,065	-		CCNA_02658	0.34	+1.2
2,811,107	+		CCNA_02658	0.39	-0.1
2,811,120	-		CCNA_02658	0.41	-2.6
2,811,127	+		CCNA_02658	0.42	+0.0
2,811,240	-		CCNA_02658	0.56	-0.4
2,811,268	-		CCNA_02658	0.60	-1.8
2,811,268	-		CCNA_02658	0.60	+0.4
2,811,428	+		CCNA_02658	0.80	-1.5
2,811,446	-		CCNA_02658	0.82	-1.3
2,811,495	+		CCNA_02658	0.88	+0.3
2,811,516	+				-0.8
2,811,521	+				-0.5
2,811,529	-				-0.1
2,811,601	+				+0.0
2,811,643	+				+0.8
2,811,643	+				-0.5
2,811,711	+				+1.3
2,811,780	+				-0.3
2,811,780	+				+1.5
2,811,836	-		CCNA_02659	0.20	+0.3
2,811,837	-		CCNA_02659	0.20	-0.9
2,811,847	+		CCNA_02659	0.23	+0.2
2,811,852	+		CCNA_02659	0.25	-0.4
2,811,899	+		CCNA_02659	0.37	+0.6
2,811,899	+		CCNA_02659	0.37	+1.2
2,811,907	-		CCNA_02659	0.40	-0.2
2,811,907	-		CCNA_02659	0.40	-2.5
2,811,907	-		CCNA_02659	0.40	-1.6
2,811,907	-		CCNA_02659	0.40	-0.3
2,811,917	-		CCNA_02659	0.42	-1.7
2,811,932	+		CCNA_02659	0.47	+2.2
2,811,956	+		CCNA_02659	0.53	+0.9
2,811,961	+		CCNA_02659	0.55	-0.5
2,811,969	-		CCNA_02659	0.57	-0.6
2,811,969	-		CCNA_02659	0.57	-1.6
2,811,969	-		CCNA_02659	0.57	-0.7
2,812,001	-		CCNA_02659	0.66	+0.5
2,812,016	+		CCNA_02659	0.70	+0.9
2,812,019	-		CCNA_02659	0.71	+0.9
2,812,028	+		CCNA_02659	0.73	+0.7
2,812,038	+		CCNA_02659	0.76	-0.1
2,812,049	+		CCNA_02659	0.79	+0.9
2,812,050	+		CCNA_02659	0.79	+0.1
2,812,063	+		CCNA_02659	0.83	-0.4
2,812,068	-		CCNA_02659	0.84	-1.8
2,812,086	+		CCNA_02659	0.89	+0.2
2,812,093	+				-0.1
2,812,093	+				+1.2
2,812,093	+				+0.4
2,812,101	-				-0.7
2,812,156	-				-0.1
2,812,156	-				-0.5
2,812,167	-				+1.1
2,812,192	-				+0.0
2,812,209	+				+1.4
2,812,209	+				+0.1
2,812,271	+		CCNA_02660	0.15	-1.3
2,812,279	-		CCNA_02660	0.17	-0.5
2,812,286	+		CCNA_02660	0.18	-1.4
2,812,294	-		CCNA_02660	0.19	-0.7
2,812,294	-		CCNA_02660	0.19	-0.8
2,812,316	-		CCNA_02660	0.23	+2.5
2,812,321	-		CCNA_02660	0.24	+0.2
2,812,324	+		CCNA_02660	0.24	-1.5
2,812,326	+		CCNA_02660	0.24	-1.1
2,812,340	-		CCNA_02660	0.27	-1.2
2,812,340	-		CCNA_02660	0.27	+0.2
2,812,340	-		CCNA_02660	0.27	-0.1
2,812,340	-		CCNA_02660	0.27	-0.7
2,812,340	-		CCNA_02660	0.27	-0.5
2,812,364	-		CCNA_02660	0.31	-0.8
2,812,374	-		CCNA_02660	0.32	-2.0
2,812,393	+		CCNA_02660	0.35	-0.6
2,812,393	+		CCNA_02660	0.35	+1.2
2,812,393	+		CCNA_02660	0.35	+0.1
2,812,393	+		CCNA_02660	0.35	+2.7
2,812,401	-		CCNA_02660	0.37	-0.3
2,812,401	-		CCNA_02660	0.37	-1.5
2,812,519	+		CCNA_02660	0.56	-1.2
2,812,524	+		CCNA_02660	0.57	+3.0
2,812,524	+		CCNA_02660	0.57	-0.2
2,812,532	-		CCNA_02660	0.58	-0.6
2,812,532	-		CCNA_02660	0.58	-1.5
2,812,534	-		CCNA_02660	0.58	-2.0
2,812,545	+		CCNA_02660	0.60	+0.4
2,812,547	+		CCNA_02660	0.60	+0.0
2,812,547	+		CCNA_02660	0.60	-1.3
2,812,547	+		CCNA_02660	0.60	+1.2
2,812,547	+		CCNA_02660	0.60	+0.6
2,812,555	-		CCNA_02660	0.62	+1.2