Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01909

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
2,052,985	-		CCNA_01907	0.84	-1.1
2,053,027	-		CCNA_01907	0.90	-0.5
2,053,082	-				+0.6
2,053,126	+				-1.7
2,053,134	-				+0.6
2,053,134	-				+2.2
2,053,140	-				-0.3
2,053,155	+				+0.7
2,053,240	+		CCNA_01908	0.17	-0.9
2,053,290	-		CCNA_01908	0.23	+0.4
2,053,311	-		CCNA_01908	0.25	-2.1
2,053,385	-		CCNA_01908	0.34	+0.6
2,053,398	+		CCNA_01908	0.36	-1.3
2,053,406	+		CCNA_01908	0.37	-1.0
2,053,412	+		CCNA_01908	0.38	-0.7
2,053,414	-		CCNA_01908	0.38	-0.6
2,053,428	-		CCNA_01908	0.40	-1.8
2,053,522	+		CCNA_01908	0.51	-0.4
2,053,620	+		CCNA_01908	0.63	+0.6
2,053,628	-		CCNA_01908	0.64	-1.3
2,053,628	-		CCNA_01908	0.64	-1.5
2,053,634	-		CCNA_01908	0.65	-1.1
2,053,644	+		CCNA_01908	0.66	-0.2
2,053,669	+		CCNA_01908	0.69	-1.6
2,053,669	+				+1.6
2,053,742	-		CCNA_01908	0.78	-1.3
2,053,753	-		CCNA_01908	0.79	-0.5
2,053,760	+		CCNA_01908	0.80	-2.3
2,053,819	+		CCNA_01908	0.88	-0.2
2,053,840	+				-1.4
2,053,923	+				-0.1
2,053,941	-				-1.3
2,053,966	+				-1.4
2,054,034	+				-0.7
2,054,040	-				+0.0
2,054,045	+				-0.6
2,054,045	+				-1.6
2,054,045	+				-1.9
2,054,053	-				-1.5
2,054,053	-				-0.9
2,054,053	-				+0.5
2,054,054	-				-0.7
2,054,054	-				-1.9
2,054,121	-		CCNA_01909	0.13	+0.4
2,054,161	+		CCNA_01909	0.17	+0.2
2,054,161	+		CCNA_01909	0.17	+0.6
2,054,162	-		CCNA_01909	0.17	-0.5
2,054,169	-		CCNA_01909	0.17	-1.4
2,054,169	-		CCNA_01909	0.17	+0.0
2,054,169	-		CCNA_01909	0.17	+0.5
2,054,174	-				+1.6
2,054,190	+		CCNA_01909	0.19	-0.7
2,054,190	+		CCNA_01909	0.19	-0.3
2,054,190	+		CCNA_01909	0.19	-1.3
2,054,217	+		CCNA_01909	0.22	-1.7
2,054,217	-		CCNA_01909	0.22	-1.1
2,054,225	-		CCNA_01909	0.22	-1.0
2,054,225	-		CCNA_01909	0.22	-2.0
2,054,225	-		CCNA_01909	0.22	-0.5
2,054,248	-		CCNA_01909	0.25	-1.8
2,054,283	+		CCNA_01909	0.28	+0.0
2,054,283	+		CCNA_01909	0.28	-1.2
2,054,283	+		CCNA_01909	0.28	-1.7
2,054,283	+		CCNA_01909	0.28	-1.6
2,054,283	+		CCNA_01909	0.28	-0.7
2,054,290	+		CCNA_01909	0.28	+1.6
2,054,291	-		CCNA_01909	0.28	-0.9
2,054,291	-				+3.2
2,054,298	+		CCNA_01909	0.29	-1.3
2,054,298	-		CCNA_01909	0.29	-0.5
2,054,339	+		CCNA_01909	0.33	-1.3
2,054,354	-		CCNA_01909	0.34	-0.6
2,054,354	-		CCNA_01909	0.34	-0.7
2,054,364	-		CCNA_01909	0.35	+0.9
2,054,375	-		CCNA_01909	0.36	-1.8
2,054,377	+		CCNA_01909	0.36	+0.0
2,054,390	-		CCNA_01909	0.37	-0.5
2,054,397	-		CCNA_01909	0.38	-1.0
2,054,397	-		CCNA_01909	0.38	-0.4
2,054,397	-		CCNA_01909	0.38	-0.5
2,054,437	-		CCNA_01909	0.42	-1.8
2,054,437	-		CCNA_01909	0.42	-1.1
2,054,437	-		CCNA_01909	0.42	-1.7
2,054,501	+		CCNA_01909	0.47	-0.3
2,054,501	+		CCNA_01909	0.47	-0.3
2,054,501	+		CCNA_01909	0.47	-0.3
2,054,501	+		CCNA_01909	0.47	-1.8
2,054,509	-		CCNA_01909	0.48	-1.3
2,054,509	-		CCNA_01909	0.48	-0.8
2,054,509	-		CCNA_01909	0.48	-0.9
2,054,512	+		CCNA_01909	0.48	+1.2
2,054,580	+		CCNA_01909	0.54	-1.0
2,054,648	+		CCNA_01909	0.61	-0.4
2,054,680	+		CCNA_01909	0.63	-0.5
2,054,683	-		CCNA_01909	0.64	-1.3
2,054,699	-		CCNA_01909	0.65	-2.3
2,054,763	+		CCNA_01909	0.71	+1.4
2,054,779	+		CCNA_01909	0.72	+1.1
2,054,792	-		CCNA_01909	0.74	-0.7
2,054,810	-		CCNA_01909	0.75	-3.0
2,054,856	-		CCNA_01909	0.79	-0.8
2,054,889	+		CCNA_01909	0.82	-0.6
2,054,917	-		CCNA_01909	0.85	+0.4
2,054,941	+		CCNA_01909	0.87	-1.7
2,054,941	+		CCNA_01909	0.87	-0.9
2,054,954	-		CCNA_01909	0.88	+0.4
2,055,012	-				-0.5
2,055,012	-				-1.7
2,055,013	-				+1.6
2,055,023	-				-1.8
2,055,028	-				+0.9
2,055,034	-				-1.0
2,055,034	-				-1.4
2,055,044	-				+1.0
2,055,044	-				-0.7
2,055,050	-				-1.5
2,055,073	+				-1.7
2,055,073	+				+0.4
2,055,181	-				-1.7
2,055,181	-				-0.9
2,055,266	-				-0.3
2,055,287	-				-1.6
2,055,310	+				-0.3
2,055,310	+				-0.4
2,055,318	-				-1.5
2,055,344	+		CCNA_01910	0.31	-1.8
2,055,347	-		CCNA_01910	0.33	+1.4
2,055,357	+		CCNA_01910	0.42	-0.1
2,055,362	+		CCNA_01910	0.46	-1.6
2,055,370	-		CCNA_01910	0.53	-0.3
2,055,388	-		CCNA_01910	0.68	-0.6
2,055,421	-				+0.4
2,055,440	-				+2.8
2,055,450	-				-0.2
2,055,450	-				-0.6
2,055,450	-				+0.4
2,055,487	+				-0.5
2,055,494	+				-1.3
2,055,502	-				-2.4
2,055,502	-				-1.1
2,055,582	+				-0.5
2,055,590	-				-0.8
2,055,604	+		CCNA_01911	0.11	+1.6
2,055,625	+		CCNA_01911	0.17	-0.7
2,055,633	+		CCNA_01911	0.19	+0.6
2,055,658	-		CCNA_01911	0.26	+0.0
2,055,658	-		CCNA_01911	0.26	+1.3
2,055,682	-		CCNA_01911	0.32	+0.6
2,055,691	-		CCNA_01911	0.35	+0.4
2,055,719	-		CCNA_01911	0.42	-1.8
2,055,734	+		CCNA_01911	0.46	+1.6
2,055,734	+		CCNA_01911	0.46	-1.0
2,055,734	+		CCNA_01911	0.46	-1.9
2,055,742	-		CCNA_01911	0.48	+0.6
2,055,746	+		CCNA_01911	0.49	-1.1
2,055,754	-		CCNA_01911	0.52	-1.5
2,055,766	-		CCNA_01911	0.55	-0.5
2,055,766	-		CCNA_01911	0.55	+1.0
2,055,773	+		CCNA_01911	0.57	+0.6
2,055,773	+		CCNA_01911	0.57	-0.1
2,055,780	+		CCNA_01911	0.59	-0.1
2,055,781	-		CCNA_01911	0.59	-0.4
2,055,785	+		CCNA_01911	0.60	-1.7
2,055,785	+		CCNA_01911	0.60	-2.4
2,055,840	+		CCNA_01911	0.75	-0.9
2,055,840	+		CCNA_01911	0.75	+0.6
2,055,894	-		CCNA_01911	0.89	+0.1
2,055,944	-				+1.2
2,055,949	-				-0.4
2,055,961	+				-1.6
2,055,971	-				-1.3
2,055,977	+				+0.0
2,055,992	-				-1.3
2,056,011	-				-1.2
2,056,011	-				-0.3
2,056,028	-				+2.2
2,056,040	+				-0.0
2,056,040	+				+1.2
2,056,040	+				-1.2
2,056,048	-				-0.2
2,056,050	+				-0.4
2,056,050	+				-0.2
2,056,053	-				+0.5