Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01899 and CCNA_01900 overlap by 4 nucleotides CCNA_01900 and CCNA_01901 are separated by 107 nucleotides
CCNA_01899: CCNA_01899 - DNA polymerase III, delta, at 2,041,635 to 2,042,645
_01899
CCNA_01900: CCNA_01900 - thymidylate kinase, at 2,042,642 to 2,043,268
_01900
CCNA_01901: CCNA_01901 - lipoprotein, at 2,043,376 to 2,044,365
_01901
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2041.653 kb on - strand at 2041.678 kb on + strand at 2041.678 kb on + strand at 2043.390 kb on - strand at 2043.396 kb on + strand at 2043.406 kb on + strand at 2043.433 kb on + strand at 2043.434 kb on - strand at 2043.434 kb on - strand at 2043.434 kb on - strand at 2043.515 kb on - strand, within CCNA_01901 at 2043.588 kb on + strand, within CCNA_01901 at 2043.591 kb on - strand, within CCNA_01901 at 2043.619 kb on - strand, within CCNA_01901 at 2043.644 kb on + strand, within CCNA_01901 at 2043.670 kb on + strand, within CCNA_01901 at 2043.670 kb on + strand, within CCNA_01901 at 2043.678 kb on - strand, within CCNA_01901 at 2043.708 kb on - strand, within CCNA_01901 at 2043.732 kb on + strand, within CCNA_01901 at 2043.732 kb on + strand, within CCNA_01901 at 2043.760 kb on - strand, within CCNA_01901 at 2043.760 kb on - strand, within CCNA_01901 at 2043.760 kb on - strand, within CCNA_01901 at 2043.760 kb on - strand, within CCNA_01901 at 2043.866 kb on + strand, within CCNA_01901 at 2043.899 kb on + strand, within CCNA_01901 at 2043.899 kb on + strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.938 kb on - strand, within CCNA_01901 at 2043.993 kb on + strand, within CCNA_01901 at 2044.006 kb on - strand, within CCNA_01901 at 2044.123 kb on - strand, within CCNA_01901 at 2044.173 kb on + strand, within CCNA_01901 at 2044.206 kb on + strand, within CCNA_01901
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 2,041,653 - +0.6 2,041,678 + +0.6 2,041,678 + +0.0 2,043,390 - +0.3 2,043,396 + -1.3 2,043,406 + -0.3 2,043,433 + -0.8 2,043,434 - +0.7 2,043,434 - -1.2 2,043,434 - +0.6 2,043,515 - CCNA_01901 0.14 -0.5 2,043,588 + CCNA_01901 0.21 -0.4 2,043,591 - CCNA_01901 0.22 +0.7 2,043,619 - CCNA_01901 0.25 -0.2 2,043,644 + CCNA_01901 0.27 -0.8 2,043,670 + CCNA_01901 0.30 -0.7 2,043,670 + CCNA_01901 0.30 -1.7 2,043,678 - CCNA_01901 0.31 -1.6 2,043,708 - CCNA_01901 0.34 -0.4 2,043,732 + CCNA_01901 0.36 -0.5 2,043,732 + CCNA_01901 0.36 +2.9 2,043,760 - CCNA_01901 0.39 +1.8 2,043,760 - CCNA_01901 0.39 -0.1 2,043,760 - CCNA_01901 0.39 -1.3 2,043,760 - CCNA_01901 0.39 -0.6 2,043,866 + CCNA_01901 0.49 +0.7 2,043,899 + CCNA_01901 0.53 -0.9 2,043,899 + CCNA_01901 0.53 -1.3 2,043,907 - CCNA_01901 0.54 +0.4 2,043,907 - CCNA_01901 0.54 -0.5 2,043,907 - CCNA_01901 0.54 -0.5 2,043,907 - CCNA_01901 0.54 -1.6 2,043,907 - CCNA_01901 0.54 +0.8 2,043,907 - CCNA_01901 0.54 -1.4 2,043,938 - CCNA_01901 0.57 -1.2 2,043,993 + CCNA_01901 0.62 +0.0 2,044,006 - CCNA_01901 0.64 -1.3 2,044,123 - CCNA_01901 0.75 -0.5 2,044,173 + CCNA_01901 0.81 +0.5 2,044,206 + CCNA_01901 0.84 -1.4
Or see this region's nucleotide sequence