Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01485

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
1,590,541	-				-0.1
1,590,633	+				-0.2
1,590,633	+				+1.0
1,590,641	-				+1.0
1,590,656	+				-0.2
1,590,671	+				+0.2
1,590,671	-				-1.0
1,590,678	+				-1.1
1,590,689	+				-0.1
1,590,737	-				-2.2
1,590,757	-				-1.5
1,590,758	-				+0.1
1,590,821	+				+1.2
1,590,938	-		CCNA_01483	0.32	-0.7
1,591,021	-		CCNA_01483	0.69	-1.2
1,591,023	+		CCNA_01483	0.70	-0.7
1,591,023	+		CCNA_01483	0.70	+0.4
1,591,023	+		CCNA_01483	0.70	+1.1
1,591,031	-		CCNA_01483	0.74	-1.2
1,591,036	-		CCNA_01483	0.76	-0.9
1,591,089	+				+0.3
1,591,099	+				-1.0
1,591,099	+				-1.3
1,591,104	+				-0.4
1,591,104	+				+0.2
1,591,104	+				-0.1
1,591,107	-				-1.3
1,591,107	-				-1.3
1,591,109	+				-2.7
1,591,112	-				-0.4
1,591,112	-				-1.0
1,591,118	+				+0.0
1,591,191	+		CCNA_01484	0.19	-1.6
1,591,299	-		CCNA_01484	0.45	-0.4
1,591,311	-		CCNA_01484	0.48	-1.5
1,591,311	-		CCNA_01484	0.48	-1.5
1,591,311	-		CCNA_01484	0.48	-1.6
1,591,357	+		CCNA_01484	0.59	-0.2
1,591,357	+		CCNA_01484	0.59	-0.8
1,591,364	+		CCNA_01484	0.60	+0.4
1,591,369	+		CCNA_01484	0.61	+1.1
1,591,386	-		CCNA_01484	0.65	-0.6
1,591,442	+		CCNA_01484	0.79	-1.9
1,591,443	-		CCNA_01484	0.79	-1.2
1,591,542	+				-0.9
1,591,553	+				-0.0
1,591,581	-				-0.1
1,591,586	-				-0.4
1,591,588	+				-1.2
1,591,588	+				-0.4
1,591,596	-				-0.6
1,591,596	-				+0.0
1,591,596	-				-0.0
1,591,627	-				-1.3
1,591,654	-		CCNA_01485	0.10	-0.4
1,591,660	-		CCNA_01485	0.11	+0.6
1,591,697	+		CCNA_01485	0.14	+0.1
1,591,697	+		CCNA_01485	0.14	-0.2
1,591,697	+		CCNA_01485	0.14	+0.4
1,591,705	-		CCNA_01485	0.15	+0.1
1,591,705	-		CCNA_01485	0.15	-1.3
1,591,723	+		CCNA_01485	0.16	-0.1
1,591,723	+		CCNA_01485	0.16	-1.4
1,591,731	-		CCNA_01485	0.17	-1.7
1,591,736	-		CCNA_01485	0.18	+0.6
1,591,821	-		CCNA_01485	0.25	-0.9
1,591,835	-		CCNA_01485	0.26	+0.3
1,591,835	-		CCNA_01485	0.26	-0.9
1,591,835	-		CCNA_01485	0.26	-3.0
1,591,847	-		CCNA_01485	0.27	-0.7
1,591,866	+		CCNA_01485	0.29	-1.3
1,591,868	+		CCNA_01485	0.29	-0.6
1,591,868	+		CCNA_01485	0.29	-0.2
1,591,915	-		CCNA_01485	0.33	-1.3
1,591,940	+		CCNA_01485	0.36	-0.8
1,591,945	+		CCNA_01485	0.36	-0.4
1,591,953	-		CCNA_01485	0.37	-1.0
1,591,953	-		CCNA_01485	0.37	-1.5
1,591,960	+		CCNA_01485	0.37	+0.3
1,591,970	+		CCNA_01485	0.38	-1.5
1,591,970	+		CCNA_01485	0.38	-1.3
1,591,970	+		CCNA_01485	0.38	-1.9
1,591,985	+		CCNA_01485	0.39	-1.6
1,591,993	-		CCNA_01485	0.40	-1.5
1,592,007	+		CCNA_01485	0.41	+0.3
1,592,015	-		CCNA_01485	0.42	+0.2
1,592,022	-		CCNA_01485	0.43	-1.0
1,592,061	-		CCNA_01485	0.46	+0.7
1,592,063	+		CCNA_01485	0.46	-0.4
1,592,063	-		CCNA_01485	0.46	-1.6
1,592,071	-		CCNA_01485	0.47	-1.1
1,592,078	+		CCNA_01485	0.48	-0.5
1,592,078	+		CCNA_01485	0.48	-0.8
1,592,086	-		CCNA_01485	0.48	-1.0
1,592,146	+		CCNA_01485	0.54	-1.8
1,592,176	+		CCNA_01485	0.56	+1.2
1,592,184	-		CCNA_01485	0.57	+0.1
1,592,231	+		CCNA_01485	0.61	-0.6
1,592,234	-		CCNA_01485	0.61	+0.3
1,592,236	+		CCNA_01485	0.62	+0.5
1,592,254	+		CCNA_01485	0.63	-0.3
1,592,276	-		CCNA_01485	0.65	+0.6
1,592,282	-		CCNA_01485	0.66	-0.7
1,592,284	-		CCNA_01485	0.66	-0.7
1,592,289	+		CCNA_01485	0.66	+0.8
1,592,289	+		CCNA_01485	0.66	+1.1
1,592,313	+		CCNA_01485	0.68	-0.4
1,592,313	+		CCNA_01485	0.68	-0.0
1,592,321	-		CCNA_01485	0.69	-0.6
1,592,321	-		CCNA_01485	0.69	-1.0
1,592,321	-		CCNA_01485	0.69	-2.0
1,592,321	-		CCNA_01485	0.69	-0.3
1,592,423	-		CCNA_01485	0.78	-0.9
1,592,439	+		CCNA_01485	0.79	-0.6
1,592,439	+		CCNA_01485	0.79	+0.5
1,592,447	-		CCNA_01485	0.80	+0.6
1,592,447	-		CCNA_01485	0.80	-1.1
1,592,490	+		CCNA_01485	0.84	-0.5
1,592,490	+		CCNA_01485	0.84	-1.3
1,592,490	+		CCNA_01485	0.84	-1.3
1,592,490	+		CCNA_01485	0.84	-2.7
1,592,498	-		CCNA_01485	0.85	-1.7
1,592,501	+		CCNA_01485	0.85	+0.4
1,592,509	-		CCNA_01485	0.86	+0.7
1,592,509	-		CCNA_01485	0.86	+0.3
1,592,516	+		CCNA_01485	0.86	-0.2
1,592,518	+		CCNA_01485	0.86	+0.0
1,592,536	+		CCNA_01485	0.88	-0.4
1,592,541	+		CCNA_01485	0.88	+1.0
1,592,544	-		CCNA_01485	0.89	-1.3
1,592,546	+		CCNA_01485	0.89	-1.9
1,592,553	+		CCNA_01485	0.89	-1.3
1,592,554	-		CCNA_01485	0.90	+2.6
1,592,554	-		CCNA_01485	0.90	-0.0
1,592,580	-				-1.9
1,592,610	+				+1.5
1,592,611	+				-1.2
1,592,628	-				-1.1
1,592,631	+				-1.2
1,592,639	-				-2.3
1,592,639	-				+0.0
1,592,639	-				+0.3
1,592,654	-				-0.8
1,592,654	-				-0.0
1,592,659	-				-0.2
1,592,710	+				-1.0
1,592,718	-				-0.5
1,592,739	+				+0.1
1,592,760	-				+1.7
1,592,764	-				-0.7
1,592,771	+				-1.2
1,592,779	-				+1.0
1,592,779	-				+0.3
1,592,779	-				+2.3
1,592,797	-				-0.6
1,592,850	-		CCNA_01486	0.14	-0.8
1,592,852	+		CCNA_01486	0.14	-0.2
1,592,855	-		CCNA_01486	0.14	-0.3
1,592,865	+		CCNA_01486	0.15	-0.2
1,592,895	+		CCNA_01486	0.18	-0.4
1,592,916	+		CCNA_01486	0.20	-2.1
1,592,916	+		CCNA_01486	0.20	+0.6
1,592,921	+		CCNA_01486	0.21	-0.8
1,592,924	-		CCNA_01486	0.21	+0.7
1,592,924	-		CCNA_01486	0.21	+0.5
1,592,924	-		CCNA_01486	0.21	-0.2
1,592,927	+		CCNA_01486	0.21	-0.7
1,592,935	+		CCNA_01486	0.22	-1.3
1,592,955	-				+2.3
1,592,965	+		CCNA_01486	0.25	-0.6
1,592,980	+		CCNA_01486	0.26	-1.4
1,592,988	-		CCNA_01486	0.27	-1.5
1,592,988	-		CCNA_01486	0.27	-1.1
1,593,045	-		CCNA_01486	0.33	+1.3
1,593,053	-		CCNA_01486	0.34	-0.5
1,593,080	-		CCNA_01486	0.36	-0.2
1,593,089	-		CCNA_01486	0.37	-0.6
1,593,139	+		CCNA_01486	0.42	-0.4
1,593,147	-		CCNA_01486	0.43	+0.5
1,593,147	-		CCNA_01486	0.43	-0.0
1,593,151	+		CCNA_01486	0.43	-0.6
1,593,158	-		CCNA_01486	0.44	+0.7
1,593,246	+		CCNA_01486	0.53	-1.6
1,593,251	+		CCNA_01486	0.53	+0.2
1,593,254	-		CCNA_01486	0.54	+1.2
1,593,269	-		CCNA_01486	0.55	+0.7
1,593,269	-		CCNA_01486	0.55	+0.3
1,593,331	+		CCNA_01486	0.61	-1.2
1,593,353	+		CCNA_01486	0.63	+0.6
1,593,373	-		CCNA_01486	0.65	-3.3
1,593,375	+		CCNA_01486	0.65	-1.1
1,593,385	+		CCNA_01486	0.66	-1.9
1,593,385	+		CCNA_01486	0.66	+0.6
1,593,385	+		CCNA_01486	0.66	+0.5
1,593,385	+		CCNA_01486	0.66	+1.3
1,593,391	+		CCNA_01486	0.67	+0.2
1,593,393	-		CCNA_01486	0.67	-1.2
1,593,393	-		CCNA_01486	0.67	-0.3
1,593,393	-		CCNA_01486	0.67	-0.0
1,593,393	-		CCNA_01486	0.67	-1.8
1,593,416	-		CCNA_01486	0.70	-0.6
1,593,424	+		CCNA_01486	0.70	-1.0
1,593,424	+		CCNA_01486	0.70	-1.3
1,593,430	+		CCNA_01486	0.71	+0.1
1,593,432	-		CCNA_01486	0.71	-1.4
1,593,434	+		CCNA_01486	0.71	-1.7
1,593,434	+		CCNA_01486	0.71	-1.3
1,593,434	+		CCNA_01486	0.71	-0.4
1,593,434	+		CCNA_01486	0.71	-1.7
1,593,434	-		CCNA_01486	0.71	-0.6
1,593,448	-		CCNA_01486	0.73	+0.3
1,593,450	+		CCNA_01486	0.73	-0.2
1,593,463	-		CCNA_01486	0.74	-1.0
1,593,547	+		CCNA_01486	0.82	-1.6
1,593,548	+		CCNA_01486	0.83	-1.0
1,593,554	+		CCNA_01486	0.83	+0.6
1,593,567	-		CCNA_01486	0.84	-1.5
1,593,619	-		CCNA_01486	0.90	-0.3
1,593,633	+				+0.7