Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01358

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
1,473,164	-		CCNA_01357	0.47	-0.1
1,473,209	-		CCNA_01357	0.49	-0.1
1,473,223	+		CCNA_01357	0.50	+0.6
1,473,228	-		CCNA_01357	0.50	+0.1
1,473,245	+		CCNA_01357	0.51	+0.9
1,473,252	+		CCNA_01357	0.52	+1.9
1,473,277	+		CCNA_01357	0.53	+0.6
1,473,277	+		CCNA_01357	0.53	-1.8
1,473,280	-		CCNA_01357	0.53	+0.4
1,473,285	-		CCNA_01357	0.53	-0.9
1,473,306	+		CCNA_01357	0.55	-0.4
1,473,346	+		CCNA_01357	0.57	-0.4
1,473,360	-		CCNA_01357	0.57	+0.5
1,473,386	-		CCNA_01357	0.59	+0.8
1,473,464	-		CCNA_01357	0.63	-1.2
1,473,512	+		CCNA_01357	0.66	+0.2
1,473,518	+		CCNA_01357	0.66	-0.8
1,473,530	+		CCNA_01357	0.67	-1.2
1,473,568	+		CCNA_01357	0.69	-1.4
1,473,593	-		CCNA_01357	0.70	+0.4
1,473,608	-		CCNA_01357	0.71	-0.4
1,473,611	+		CCNA_01357	0.71	+0.9
1,473,611	+		CCNA_01357	0.71	-0.0
1,473,617	+		CCNA_01357	0.71	+0.5
1,473,632	+		CCNA_01357	0.72	-0.5
1,473,632	+		CCNA_01357	0.72	-0.7
1,473,632	+		CCNA_01357	0.72	-1.5
1,473,642	-		CCNA_01357	0.73	-2.7
1,473,675	-		CCNA_01357	0.75	-0.7
1,473,686	+		CCNA_01357	0.75	-0.1
1,473,686	+		CCNA_01357	0.75	-1.6
1,473,734	-		CCNA_01357	0.78	+0.5
1,473,776	+		CCNA_01357	0.80	-0.7
1,473,776	+		CCNA_01357	0.80	+0.3
1,473,777	-		CCNA_01357	0.80	-0.5
1,473,784	-		CCNA_01357	0.80	-1.6
1,473,791	+		CCNA_01357	0.81	+0.3
1,473,807	+		CCNA_01357	0.82	-0.1
1,473,836	+		CCNA_01357	0.83	-0.2
1,473,844	-				+1.7
1,473,846	-		CCNA_01357	0.84	+0.1
1,473,873	-		CCNA_01357	0.85	-1.3
1,473,880	-		CCNA_01357	0.86	-0.4
1,473,911	-		CCNA_01357	0.87	-2.2
1,473,932	-		CCNA_01357	0.88	+0.7
1,473,988	+				-1.6
1,473,996	-				-0.1
1,474,003	+				+0.6
1,474,009	-				-1.0
1,474,036	-				-0.4
1,474,067	-				+1.9
1,474,068	+				-0.9
1,474,109	+				-1.1
1,474,129	+				-0.7
1,474,129	+				-0.6
1,474,138	+				-0.7
1,474,138	+				-1.1
1,474,144	+				+0.8
1,474,144	+				-0.3
1,474,146	-				-1.1
1,474,146	-				+0.0
1,474,146	-				-0.6
1,474,166	-				-2.0
1,474,220	+				+0.4
1,474,289	-		CCNA_01358	0.16	+1.3
1,474,289	-		CCNA_01358	0.16	-2.8
1,474,332	+		CCNA_01358	0.20	+1.1
1,474,340	-		CCNA_01358	0.21	-2.6
1,474,340	-		CCNA_01358	0.21	-1.3
1,474,423	+		CCNA_01358	0.31	+0.7
1,474,423	+		CCNA_01358	0.31	-1.8
1,474,423	+		CCNA_01358	0.31	-1.8
1,474,423	+		CCNA_01358	0.31	-0.3
1,474,423	+		CCNA_01358	0.31	-0.3
1,474,423	+		CCNA_01358	0.31	-1.1
1,474,423	+		CCNA_01358	0.31	-0.6
1,474,423	+		CCNA_01358	0.31	+0.8
1,474,423	+		CCNA_01358	0.31	-0.2
1,474,423	+		CCNA_01358	0.31	-2.1
1,474,423	+		CCNA_01358	0.31	+0.3
1,474,431	-		CCNA_01358	0.31	-0.6
1,474,431	-		CCNA_01358	0.31	+3.3
1,474,431	-		CCNA_01358	0.31	-0.9
1,474,431	-		CCNA_01358	0.31	-1.4
1,474,431	-		CCNA_01358	0.31	-0.6
1,474,435	+		CCNA_01358	0.32	-1.3
1,474,435	+		CCNA_01358	0.32	-0.1
1,474,437	+		CCNA_01358	0.32	-0.1
1,474,437	+		CCNA_01358	0.32	-1.3
1,474,445	+		CCNA_01358	0.33	-1.1
1,474,445	+		CCNA_01358	0.33	+0.8
1,474,445	-		CCNA_01358	0.33	-1.1
1,474,445	-		CCNA_01358	0.33	-1.2
1,474,445	-		CCNA_01358	0.33	-1.1
1,474,447	+		CCNA_01358	0.33	-0.9
1,474,448	-		CCNA_01358	0.33	-1.0
1,474,448	-		CCNA_01358	0.33	+0.1
1,474,453	-		CCNA_01358	0.34	-1.3
1,474,453	-		CCNA_01358	0.34	-0.5
1,474,453	-		CCNA_01358	0.34	+0.3
1,474,536	-		CCNA_01358	0.43	-0.2
1,474,540	+		CCNA_01358	0.44	-0.1
1,474,548	-		CCNA_01358	0.44	-0.9
1,474,594	-		CCNA_01358	0.50	-0.3
1,474,594	-		CCNA_01358	0.50	-0.7
1,474,618	-		CCNA_01358	0.52	-0.2
1,474,620	-		CCNA_01358	0.52	-0.2
1,474,624	+		CCNA_01358	0.53	+0.7
1,474,706	+		CCNA_01358	0.62	-1.4
1,474,724	-		CCNA_01358	0.64	-1.8
1,474,743	-		CCNA_01358	0.66	-0.8
1,474,745	+		CCNA_01358	0.66	+0.9
1,474,753	-		CCNA_01358	0.67	-0.6
1,474,769	-		CCNA_01358	0.69	-1.0
1,474,771	+		CCNA_01358	0.69	-0.9
1,474,779	-		CCNA_01358	0.70	-1.2
1,474,779	-		CCNA_01358	0.70	+0.6
1,474,847	+		CCNA_01358	0.78	-0.6
1,474,860	-		CCNA_01358	0.79	-0.7
1,474,862	+		CCNA_01358	0.79	+0.7
1,474,862	-		CCNA_01358	0.79	-1.2
1,474,885	-		CCNA_01358	0.82	-1.9
1,474,885	-		CCNA_01358	0.82	+0.3
1,474,890	-		CCNA_01358	0.82	+0.0
1,474,903	+		CCNA_01358	0.84	-0.7
1,474,965	+				-1.2
1,475,020	-				+0.9
1,475,032	+				-1.1
1,475,032	+				+0.1
1,475,038	-				-2.0
1,475,038	-				-0.8
1,475,078	-				-1.4
1,475,178	-		CCNA_01359	0.17	-0.4
1,475,178	-		CCNA_01359	0.17	+0.1
1,475,217	+		CCNA_01359	0.21	-1.6
1,475,235	-		CCNA_01359	0.24	-0.8
1,475,252	+		CCNA_01359	0.26	+0.5
1,475,263	+		CCNA_01359	0.27	-0.0
1,475,295	+		CCNA_01359	0.31	-0.6
1,475,306	+		CCNA_01359	0.32	-0.7
1,475,360	+		CCNA_01359	0.39	+0.7
1,475,367	+		CCNA_01359	0.40	+0.8
1,475,378	-		CCNA_01359	0.41	+0.4
1,475,378	-		CCNA_01359	0.41	-0.7
1,475,414	-		CCNA_01359	0.46	-2.6
1,475,442	+		CCNA_01359	0.49	-1.2
1,475,450	-		CCNA_01359	0.50	-1.8
1,475,450	-		CCNA_01359	0.50	-0.6
1,475,450	-		CCNA_01359	0.50	+0.7
1,475,469	+		CCNA_01359	0.52	-2.0
1,475,609	-		CCNA_01359	0.70	-0.2
1,475,617	-		CCNA_01359	0.71	-2.2
1,475,640	-		CCNA_01359	0.74	-0.9
1,475,640	-		CCNA_01359	0.74	-0.4
1,475,640	-		CCNA_01359	0.74	+0.7
1,475,669	+		CCNA_01359	0.77	+0.8
1,475,708	-		CCNA_01359	0.82	-1.2
1,475,764	-		CCNA_01359	0.89	-2.5
1,475,832	-				-1.5
1,475,961	-				-0.3
1,475,961	-				-1.1
1,475,961	-				-0.2
1,475,976	+				+0.7
1,475,976	+				+0.3
1,475,977	+				+0.6
1,475,977	+				-1.5
1,475,977	+				-1.2
1,475,977	+				-1.1
1,475,977	+				+1.4
1,475,977	+				+0.6
1,475,984	-				-1.2
1,475,985	-				-2.8
1,475,985	-				+0.3
1,475,985	-				+0.2
1,475,992	+				+0.6
1,475,992	+				+0.5
1,476,033	+				+0.3
1,476,041	-		CCNA_01360	0.10	-1.2