Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01099

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
1,203,193	-				+1.0
1,203,195	+				+0.1
1,203,195	+				-0.3
1,203,195	+				+0.3
1,203,203	-				-0.1
1,203,203	-				-1.7
1,203,203	-				+0.6
1,203,203	-				+1.9
1,203,255	-				+0.5
1,203,309	-				+1.2
1,203,310	+				-0.7
1,203,418	-				+2.1
1,203,433	-				+2.1
1,204,111	-				+0.2
1,204,111	-				+0.8
1,204,124	-				-0.5
1,204,144	-				-1.0
1,204,163	+				-1.1
1,204,163	+				-0.8
1,204,168	+				-1.1
1,204,171	-				-0.9
1,204,171	-				-0.4
1,204,171	-				-2.6
1,204,194	+				-1.7
1,204,220	+				-1.8
1,204,239	+		CCNA_01099	0.11	-1.7
1,204,246	-		CCNA_01099	0.12	-0.9
1,204,264	+		CCNA_01099	0.13	-0.8
1,204,268	-		CCNA_01099	0.14	-0.4
1,204,270	+		CCNA_01099	0.14	+0.1
1,204,285	-		CCNA_01099	0.15	-0.0
1,204,316	-		CCNA_01099	0.18	-0.4
1,204,339	-		CCNA_01099	0.20	-1.2
1,204,348	+		CCNA_01099	0.20	-0.0
1,204,356	-		CCNA_01099	0.21	-0.7
1,204,382	-		CCNA_01099	0.23	+0.2
1,204,412	-		CCNA_01099	0.26	-0.7
1,204,518	+		CCNA_01099	0.35	-1.6
1,204,526	-		CCNA_01099	0.35	-1.3
1,204,536	-		CCNA_01099	0.36	+0.6
1,204,536	-		CCNA_01099	0.36	-2.2
1,204,586	+		CCNA_01099	0.40	-1.0
1,204,620	+		CCNA_01099	0.43	+0.1
1,204,624	+		CCNA_01099	0.43	-1.9
1,204,659	-		CCNA_01099	0.46	+0.8
1,204,676	+		CCNA_01099	0.48	-0.1
1,204,683	+		CCNA_01099	0.48	-0.3
1,204,690	+		CCNA_01099	0.49	-0.2
1,204,698	-		CCNA_01099	0.50	-0.9
1,204,708	+		CCNA_01099	0.51	+0.1
1,204,731	-		CCNA_01099	0.52	+0.2
1,204,785	+		CCNA_01099	0.57	-1.0
1,204,793	-		CCNA_01099	0.58	-0.5
1,204,801	+		CCNA_01099	0.58	-1.5
1,204,803	+		CCNA_01099	0.59	-0.8
1,204,803	+		CCNA_01099	0.59	-0.0
1,204,829	-		CCNA_01099	0.61	-1.3
1,204,839	-		CCNA_01099	0.62	-1.8
1,204,841	+		CCNA_01099	0.62	-0.5
1,204,844	-		CCNA_01099	0.62	-0.3
1,204,854	-		CCNA_01099	0.63	-2.1
1,204,867	-		CCNA_01099	0.64	-1.8
1,204,881	+		CCNA_01099	0.65	-0.9
1,204,894	-		CCNA_01099	0.66	-0.6
1,204,894	-		CCNA_01099	0.66	-1.8
1,204,940	+		CCNA_01099	0.70	-2.0
1,204,950	+		CCNA_01099	0.71	+2.1
1,205,009	-		CCNA_01099	0.76	+0.5
1,205,029	-		CCNA_01099	0.77	-1.3
1,205,035	+		CCNA_01099	0.78	-1.5
1,205,036	+		CCNA_01099	0.78	-1.7
1,205,036	+		CCNA_01099	0.78	-3.0
1,205,044	-		CCNA_01099	0.79	-0.0
1,205,066	-		CCNA_01099	0.81	-2.1
1,205,071	-		CCNA_01099	0.81	-2.1
1,205,071	-		CCNA_01099	0.81	-1.3
1,205,128	+		CCNA_01099	0.86	-3.5
1,205,128	+		CCNA_01099	0.86	-2.4
1,205,136	-		CCNA_01099	0.86	-1.6
1,205,141	-		CCNA_01099	0.87	-2.4
1,205,150	-		CCNA_01099	0.88	-2.2
1,205,247	+				-0.3
1,205,247	+				+0.2
1,205,247	+				-1.0
1,205,255	-				-1.5
1,205,314	-				+0.6
1,205,316	-				-1.4
1,205,413	-				-0.4
1,205,420	-				+0.4
1,205,454	-				-0.9
1,205,487	+				+2.1
1,205,505	-				-1.0
1,205,516	+				-0.2
1,205,519	-				+0.5
1,205,521	+				-1.0
1,205,524	-				-1.0
1,205,528	+				-0.7
1,205,536	-				+1.2
1,205,580	+		CCNA_01100	0.11	-1.5
1,205,622	-		CCNA_01100	0.13	+0.1
1,205,622	-		CCNA_01100	0.13	-0.5
1,205,631	-		CCNA_01100	0.14	-0.5
1,205,631	-		CCNA_01100	0.14	+0.1
1,205,655	+		CCNA_01100	0.15	-1.6
1,205,730	-		CCNA_01100	0.19	-2.4
1,205,730	-		CCNA_01100	0.19	+0.5
1,205,738	+		CCNA_01100	0.19	+0.8
1,205,753	+		CCNA_01100	0.20	-2.9
1,205,757	-		CCNA_01100	0.20	-0.5
1,205,761	-		CCNA_01100	0.21	-0.7
1,205,761	-		CCNA_01100	0.21	+0.5
1,205,766	-		CCNA_01100	0.21	-0.6
1,205,773	+		CCNA_01100	0.21	-0.8
1,205,776	-		CCNA_01100	0.21	+0.6
1,205,908	+		CCNA_01100	0.28	+0.3
1,205,927	-		CCNA_01100	0.29	-0.7
1,205,930	+		CCNA_01100	0.29	+0.8
1,205,944	+		CCNA_01100	0.30	-0.8
1,205,944	+		CCNA_01100	0.30	-1.0
1,205,944	+		CCNA_01100	0.30	-0.7
1,205,944	+		CCNA_01100	0.30	-0.8
1,205,952	-		CCNA_01100	0.31	-0.7
1,205,952	-		CCNA_01100	0.31	+0.7
1,205,952	-		CCNA_01100	0.31	-1.5
1,205,952	-		CCNA_01100	0.31	+0.6
1,205,971	+		CCNA_01100	0.32	+1.2
1,205,971	-		CCNA_01100	0.32	-0.7
1,205,976	+		CCNA_01100	0.32	-0.5
1,205,976	+		CCNA_01100	0.32	-1.1
1,205,976	+		CCNA_01100	0.32	-0.2
1,205,976	+		CCNA_01100	0.32	-0.6
1,205,976	+		CCNA_01100	0.32	-1.3
1,205,984	-		CCNA_01100	0.32	-0.5
1,205,984	-		CCNA_01100	0.32	-1.7
1,205,984	-		CCNA_01100	0.32	+0.7
1,205,984	-		CCNA_01100	0.32	+0.4
1,205,990	+		CCNA_01100	0.33	-1.2
1,205,990	+		CCNA_01100	0.33	-2.1
1,205,990	+		CCNA_01100	0.33	-2.5
1,205,990	+		CCNA_01100	0.33	-0.4
1,205,990	+		CCNA_01100	0.33	-1.7
1,205,990	+		CCNA_01100	0.33	-1.7
1,205,990	+		CCNA_01100	0.33	-0.2
1,205,990	+		CCNA_01100	0.33	-1.3
1,205,998	-		CCNA_01100	0.33	-0.6
1,205,998	-		CCNA_01100	0.33	-1.3
1,206,011	+		CCNA_01100	0.34	-1.4
1,206,032	+		CCNA_01100	0.35	-0.2
1,206,042	-		CCNA_01100	0.35	+0.2
1,206,053	-		CCNA_01100	0.36	-0.1
1,206,087	+		CCNA_01100	0.38	-2.7
1,206,097	+		CCNA_01100	0.38	-1.5
1,206,097	+		CCNA_01100	0.38	-1.0
1,206,113	+		CCNA_01100	0.39	-1.0
1,206,113	+		CCNA_01100	0.39	+0.3
1,206,133	+		CCNA_01100	0.40	-2.6
1,206,145	-		CCNA_01100	0.41	+0.5
1,206,156	+		CCNA_01100	0.41	-1.3
1,206,156	+		CCNA_01100	0.41	-0.6
1,206,173	+		CCNA_01100	0.42	+0.4
1,206,176	-		CCNA_01100	0.42	+0.6
1,206,181	-		CCNA_01100	0.42	+0.8
1,206,181	-		CCNA_01100	0.42	+1.0
1,206,181	-		CCNA_01100	0.42	+0.4
1,206,183	+		CCNA_01100	0.43	-1.2
1,206,191	-		CCNA_01100	0.43	-0.2
1,206,191	-		CCNA_01100	0.43	+1.3
1,206,230	-		CCNA_01100	0.45	-1.5
1,206,247	-		CCNA_01100	0.46	+0.4