Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01078

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
1,182,239	+		CCNA_01077	0.60	-0.7
1,182,244	+		CCNA_01077	0.60	-0.9
1,182,279	+		CCNA_01077	0.62	+0.8
1,182,285	+		CCNA_01077	0.62	+0.2
1,182,288	-		CCNA_01077	0.63	+0.9
1,182,290	+		CCNA_01077	0.63	-1.7
1,182,295	+		CCNA_01077	0.63	+0.5
1,182,298	-		CCNA_01077	0.63	-0.9
1,182,359	+		CCNA_01077	0.66	-1.2
1,182,359	+		CCNA_01077	0.66	-2.2
1,182,359	+		CCNA_01077	0.66	+0.2
1,182,362	-		CCNA_01077	0.66	-1.5
1,182,368	+		CCNA_01077	0.66	-1.2
1,182,376	-		CCNA_01077	0.67	-0.5
1,182,376	-		CCNA_01077	0.67	-1.7
1,182,376	-		CCNA_01077	0.67	-2.1
1,182,381	+		CCNA_01077	0.67	+0.2
1,182,389	-		CCNA_01077	0.67	-1.3
1,182,402	-		CCNA_01077	0.68	-2.3
1,182,404	+		CCNA_01077	0.68	-0.1
1,182,404	+		CCNA_01077	0.68	+0.5
1,182,405	+		CCNA_01077	0.68	-2.5
1,182,405	+		CCNA_01077	0.68	-0.6
1,182,405	+		CCNA_01077	0.68	-2.7
1,182,405	+		CCNA_01077	0.68	+0.5
1,182,405	+		CCNA_01077	0.68	-1.9
1,182,405	+		CCNA_01077	0.68	-0.4
1,182,405	+		CCNA_01077	0.68	-0.8
1,182,405	+		CCNA_01077	0.68	-0.0
1,182,405	+		CCNA_01077	0.68	-0.1
1,182,405	+		CCNA_01077	0.68	-0.3
1,182,405	+		CCNA_01077	0.68	+0.0
1,182,405	+		CCNA_01077	0.68	-1.9
1,182,405	+		CCNA_01077	0.68	-0.7
1,182,405	+		CCNA_01077	0.68	-1.5
1,182,405	+		CCNA_01077	0.68	-1.3
1,182,413	-		CCNA_01077	0.68	+0.9
1,182,413	-		CCNA_01077	0.68	-1.6
1,182,413	-		CCNA_01077	0.68	-0.3
1,182,413	-		CCNA_01077	0.68	+1.1
1,182,413	-		CCNA_01077	0.68	-0.6
1,182,413	-		CCNA_01077	0.68	-1.7
1,182,413	-		CCNA_01077	0.68	-1.3
1,182,413	-		CCNA_01077	0.68	-0.2
1,182,413	-		CCNA_01077	0.68	-2.5
1,182,413	-		CCNA_01077	0.68	-2.2
1,182,413	-		CCNA_01077	0.68	-1.0
1,182,413	-		CCNA_01077	0.68	-1.4
1,182,418	-		CCNA_01077	0.69	-1.5
1,182,428	-		CCNA_01077	0.69	-0.4
1,182,428	-				+0.9
1,182,428	-		CCNA_01077	0.69	-0.4
1,182,428	-		CCNA_01077	0.69	+1.0
1,182,436	+		CCNA_01077	0.70	+1.0
1,182,470	+		CCNA_01077	0.71	-0.1
1,182,470	+		CCNA_01077	0.71	-2.1
1,182,470	+		CCNA_01077	0.71	-2.0
1,182,477	+		CCNA_01077	0.72	-1.7
1,182,478	-		CCNA_01077	0.72	+0.8
1,182,478	-		CCNA_01077	0.72	+0.0
1,182,496	-		CCNA_01077	0.72	-0.1
1,182,510	-		CCNA_01077	0.73	+0.5
1,182,562	+		CCNA_01077	0.76	-0.6
1,182,565	-		CCNA_01077	0.76	-1.5
1,182,623	-		CCNA_01077	0.78	-1.4
1,182,657	-		CCNA_01077	0.80	-1.8
1,182,663	+		CCNA_01077	0.80	-2.2
1,182,671	-		CCNA_01077	0.81	-1.5
1,182,671	-		CCNA_01077	0.81	-1.4
1,182,677	-		CCNA_01077	0.81	+1.0
1,182,688	+		CCNA_01077	0.82	-1.2
1,182,688	+		CCNA_01077	0.82	+0.7
1,182,705	+		CCNA_01077	0.82	-1.3
1,182,713	-		CCNA_01077	0.83	-1.0
1,182,713	-		CCNA_01077	0.83	-2.1
1,182,713	-		CCNA_01077	0.83	+0.7
1,182,713	-		CCNA_01077	0.83	-1.4
1,182,716	+		CCNA_01077	0.83	-1.5
1,182,724	-		CCNA_01077	0.83	+0.7
1,182,732	+		CCNA_01077	0.84	+1.3
1,182,748	+		CCNA_01077	0.84	+0.1
1,182,751	+		CCNA_01077	0.85	-0.4
1,182,756	-		CCNA_01077	0.85	+0.2
1,182,796	-		CCNA_01077	0.87	+1.0
1,182,836	-		CCNA_01077	0.89	-0.8
1,182,840	+		CCNA_01077	0.89	-1.4
1,182,850	+		CCNA_01077	0.89	+0.1
1,182,858	-		CCNA_01077	0.90	+0.1
1,182,860	-		CCNA_01077	0.90	+0.2
1,182,893	-				+1.4
1,182,936	+				-2.8
1,182,936	+				+0.9
1,182,942	+				-1.8
1,182,942	-				-2.6
1,182,942	-				-0.4
1,182,944	-				+0.8
1,182,944	-				-1.3
1,182,944	-				+0.7
1,182,944	-				+0.3
1,182,944	-				-0.7
1,182,944	-				-0.9
1,182,950	-				-1.8
1,182,969	-				-0.1
1,183,012	+				-0.5
1,183,021	-				-2.3
1,183,021	-				-1.8
1,183,033	-				-1.3
1,183,034	-				-0.9
1,183,063	+				-1.5
1,183,064	+				-1.0
1,183,064	+				-2.6
1,183,071	-				+1.5
1,183,104	+				-0.9
1,183,104	+				-1.0
1,183,113	-				-1.2
1,183,221	+				-0.5
1,183,221	+				-0.9
1,183,222	+				-1.4
1,183,222	+				-0.7
1,183,229	-				-1.4
1,183,257	+				+0.8
1,183,257	+				-1.6
1,183,263	+				-0.7
1,183,285	-				-1.5
1,183,344	-		CCNA_01078	0.14	+1.5
1,183,354	-		CCNA_01078	0.15	-1.4
1,183,414	+		CCNA_01078	0.23	-0.4
1,183,423	-		CCNA_01078	0.24	+1.5
1,183,423	-		CCNA_01078	0.24	-0.3
1,183,423	-		CCNA_01078	0.24	-0.4
1,183,423	-		CCNA_01078	0.24	-2.1
1,183,441	+		CCNA_01078	0.27	-0.9
1,183,494	+		CCNA_01078	0.34	-0.9
1,183,505	+		CCNA_01078	0.35	-0.1
1,183,505	+		CCNA_01078	0.35	-1.6
1,183,513	-		CCNA_01078	0.36	-2.1
1,183,513	-		CCNA_01078	0.36	-2.0
1,183,538	-		CCNA_01078	0.40	-1.9
1,183,586	+		CCNA_01078	0.46	+0.2
1,183,592	+		CCNA_01078	0.47	-1.1
1,183,592	+		CCNA_01078	0.47	-1.2
1,183,600	-		CCNA_01078	0.48	-1.0
1,183,600	-		CCNA_01078	0.48	-0.8
1,183,621	+		CCNA_01078	0.51	-1.0
1,183,621	+		CCNA_01078	0.51	-1.8
1,183,621	+		CCNA_01078	0.51	-0.6
1,183,621	+		CCNA_01078	0.51	+0.1
1,183,629	-		CCNA_01078	0.52	-0.1
1,183,629	-		CCNA_01078	0.52	+0.3
1,183,629	-		CCNA_01078	0.52	+0.4
1,183,629	-		CCNA_01078	0.52	-0.6
1,183,667	-		CCNA_01078	0.57	-2.0
1,183,675	+		CCNA_01078	0.58	+0.1
1,183,682	+		CCNA_01078	0.59	-0.6
1,183,690	-		CCNA_01078	0.60	-0.2
1,183,715	+		CCNA_01078	0.63	-1.0
1,183,723	-		CCNA_01078	0.64	-2.8
1,183,749	+		CCNA_01078	0.68	-2.6
1,183,761	-		CCNA_01078	0.69	-0.6
1,183,844	+		CCNA_01078	0.80	-1.1
1,183,907	-		CCNA_01078	0.89	-0.0
1,183,927	+				-1.5
1,183,946	+				-1.0
1,183,981	+				-1.5
1,184,002	-				-0.4
1,184,030	+				+0.2
1,184,030	+				-1.1
1,184,032	-		CCNA_01079	0.10	+0.6
1,184,038	-		CCNA_01079	0.14	+0.0
1,184,038	-		CCNA_01079	0.14	+1.5
1,184,038	-		CCNA_01079	0.14	-1.1
1,184,038	-		CCNA_01079	0.14	+0.9
1,184,057	+		CCNA_01079	0.24	-1.9
1,184,073	-		CCNA_01079	0.33	-0.0
1,184,088	+		CCNA_01079	0.42	+0.1
1,184,088	+		CCNA_01079	0.42	-0.9
1,184,096	-		CCNA_01079	0.46	-0.0
1,184,105	+		CCNA_01079	0.51	+0.2
1,184,120	+		CCNA_01079	0.60	-2.5
1,184,145	+		CCNA_01079	0.74	-0.1
1,184,145	+		CCNA_01079	0.74	-2.6
1,184,153	-		CCNA_01079	0.79	+0.1
1,184,198	+				-2.0
1,184,206	-				+1.9
1,184,244	+				+0.3
1,184,279	+				-0.2
1,184,320	+		CCNA_01080	0.12	+0.9
1,184,325	+		CCNA_01080	0.13	+0.7
1,184,334	-		CCNA_01080	0.14	+0.1
1,184,368	+		CCNA_01080	0.20	+1.1
1,184,371	-		CCNA_01080	0.21	+0.9
1,184,379	+		CCNA_01080	0.22	+0.0
1,184,394	+		CCNA_01080	0.25	-1.3
1,184,399	+		CCNA_01080	0.26	+1.5
1,184,399	+		CCNA_01080	0.26	+0.7
1,184,408	+		CCNA_01080	0.27	-0.5
1,184,412	-		CCNA_01080	0.28	-1.0
1,184,419	+		CCNA_01080	0.29	-0.1
1,184,424	+		CCNA_01080	0.30	-1.8
1,184,424	+		CCNA_01080	0.30	-0.1
1,184,432	-		CCNA_01080	0.32	-0.2
1,184,438	+		CCNA_01080	0.33	-0.0
1,184,465	+		CCNA_01080	0.37	+0.1
1,184,491	+		CCNA_01080	0.42	+0.4
1,184,499	-		CCNA_01080	0.43	+2.1
1,184,524	+		CCNA_01080	0.48	-0.3
1,184,524	+		CCNA_01080	0.48	-0.1
1,184,524	+		CCNA_01080	0.48	-0.2
1,184,524	+		CCNA_01080	0.48	+0.7
1,184,524	+		CCNA_01080	0.48	-0.4
1,184,524	+		CCNA_01080	0.48	-1.0
1,184,524	+		CCNA_01080	0.48	+0.9
1,184,524	+		CCNA_01080	0.48	+1.5
1,184,524	+		CCNA_01080	0.48	+0.2
1,184,524	+		CCNA_01080	0.48	+1.0
1,184,524	+		CCNA_01080	0.48	+0.0
1,184,524	+		CCNA_01080	0.48	+1.2
1,184,524	+		CCNA_01080	0.48	-0.1
1,184,524	+		CCNA_01080	0.48	-0.6
1,184,524	-		CCNA_01080	0.48	+0.5
1,184,530	-		CCNA_01080	0.49	+0.5
1,184,532	-		CCNA_01080	0.49	-1.1
1,184,532	-		CCNA_01080	0.49	+0.7
1,184,532	-		CCNA_01080	0.49	-0.8
1,184,532	-		CCNA_01080	0.49	-0.9
1,184,532	-		CCNA_01080	0.49	-1.5
1,184,532	-		CCNA_01080	0.49	-0.1
1,184,532	-		CCNA_01080	0.49	-0.1
1,184,532	-		CCNA_01080	0.49	-0.4
1,184,532	-		CCNA_01080	0.49	+0.6
1,184,532	-		CCNA_01080	0.49	-1.5
1,184,532	-		CCNA_01080	0.49	-1.0
1,184,534	+		CCNA_01080	0.50	+1.6
1,184,537	-		CCNA_01080	0.50	-0.9
1,184,542	-		CCNA_01080	0.51	-1.9
1,184,580	+		CCNA_01080	0.58	+0.0
1,184,612	-		CCNA_01080	0.63	+0.4
1,184,619	+		CCNA_01080	0.65	+0.1
1,184,680	+		CCNA_01080	0.76	+0.9
1,184,688	-		CCNA_01080	0.77	-0.6
1,184,707	-		CCNA_01080	0.80	-1.2
1,184,713	+		CCNA_01080	0.81	-1.2
1,184,754	-		CCNA_01080	0.89	+0.2
1,184,756	-		CCNA_01080	0.89	-0.6
1,184,756	-		CCNA_01080	0.89	+0.1
1,184,791	+				+0.5
1,184,803	+				+0.2
1,184,859	+				+0.1
1,184,886	+				-0.5
1,184,894	-				-2.7
1,184,904	-				-2.0
1,184,927	+				-0.4
1,184,927	+				-1.8
1,184,937	+				-0.4
1,184,945	-				+2.1
1,184,955	-		CCNA_01081	0.12	+0.7
1,184,962	+		CCNA_01081	0.13	+0.1
1,184,970	-		CCNA_01081	0.14	-1.2
1,184,977	+		CCNA_01081	0.15	+0.3
1,184,977	+		CCNA_01081	0.15	-0.6
1,184,982	+		CCNA_01081	0.15	+0.0
1,184,985	-		CCNA_01081	0.16	+0.4
1,184,990	-		CCNA_01081	0.16	-2.2