Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01012

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
1,091,490	-		CCNA_01011	0.37	+0.8
1,091,504	-		CCNA_01011	0.38	+2.2
1,091,514	-		CCNA_01011	0.39	+1.4
1,091,559	+		CCNA_01011	0.42	-0.6
1,091,561	-		CCNA_01011	0.42	+2.6
1,091,587	-		CCNA_01011	0.45	+1.4
1,091,604	-		CCNA_01011	0.46	+1.8
1,091,640	-		CCNA_01011	0.49	+2.0
1,091,679	+		CCNA_01011	0.52	-0.6
1,091,689	+		CCNA_01011	0.53	-0.8
1,091,697	-		CCNA_01011	0.54	+1.2
1,091,784	-		CCNA_01011	0.61	+1.9
1,091,825	+		CCNA_01011	0.64	+0.7
1,091,841	+		CCNA_01011	0.66	-0.6
1,091,865	+		CCNA_01011	0.68	+0.1
1,091,868	-		CCNA_01011	0.68	+2.0
1,091,886	+		CCNA_01011	0.69	-1.2
1,091,896	+		CCNA_01011	0.70	-1.7
1,091,904	-		CCNA_01011	0.71	+1.8
1,091,906	+		CCNA_01011	0.71	+0.6
1,091,911	+		CCNA_01011	0.71	-0.3
1,091,911	+		CCNA_01011	0.71	+0.6
1,091,914	-		CCNA_01011	0.72	+1.5
1,091,917	-		CCNA_01011	0.72	+0.0
1,091,919	-		CCNA_01011	0.72	+3.0
1,091,919	-		CCNA_01011	0.72	+1.5
1,091,945	+		CCNA_01011	0.74	+0.3
1,092,009	+		CCNA_01011	0.80	-0.4
1,092,059	+		CCNA_01011	0.84	-1.3
1,092,059	+		CCNA_01011	0.84	-1.4
1,092,059	+		CCNA_01011	0.84	-1.6
1,092,067	-		CCNA_01011	0.84	+1.4
1,092,103	+		CCNA_01011	0.87	+0.8
1,092,113	-		CCNA_01011	0.88	+1.0
1,092,119	-		CCNA_01011	0.89	+1.3
1,092,186	+				-0.5
1,092,191	+				-0.9
1,092,193	-				-1.0
1,092,194	-				+1.2
1,092,199	-				+0.2
1,092,206	+				-1.3
1,092,206	+				-0.6
1,092,259	-				+0.8
1,092,269	-				+1.8
1,092,276	+				-0.8
1,092,323	+				-0.4
1,092,329	+				+0.5
1,092,329	+				-0.0
1,092,337	-				+1.2
1,092,337	-				-0.8
1,092,409	+				+0.5
1,092,601	-		CCNA_01012	0.19	+0.7
1,092,651	+		CCNA_01012	0.23	+0.7
1,092,734	+		CCNA_01012	0.29	+0.3
1,092,808	+		CCNA_01012	0.34	+0.1
1,092,813	+		CCNA_01012	0.34	-1.4
1,093,211	+		CCNA_01012	0.63	-0.5
1,093,640	+				-0.5
1,093,703	+				+0.4
1,093,725	-				+0.2
1,093,729	+				+1.5
1,093,775	-				+1.3
1,093,801	+		CCNA_01013	0.12	+1.8
1,093,809	-		CCNA_01013	0.13	-0.3
1,093,851	+		CCNA_01013	0.19	+1.8
1,093,855	+		CCNA_01013	0.20	+1.1
1,093,857	-		CCNA_01013	0.20	-0.5
1,093,870	+		CCNA_01013	0.22	+1.2
1,093,878	-		CCNA_01013	0.23	-0.7
1,093,904	+		CCNA_01013	0.27	+1.7
1,093,966	+		CCNA_01013	0.35	+1.9
1,093,992	-		CCNA_01013	0.39	-1.7
1,093,998	-		CCNA_01013	0.40	-0.3
1,093,998	-		CCNA_01013	0.40	-1.6
1,094,019	+		CCNA_01013	0.43	+1.3
1,094,019	-		CCNA_01013	0.43	+1.5
1,094,031	-		CCNA_01013	0.45	+0.1
1,094,043	+		CCNA_01013	0.46	+1.5
1,094,043	+		CCNA_01013	0.46	+1.2
1,094,043	+		CCNA_01013	0.46	+1.3
1,094,051	-		CCNA_01013	0.47	+0.1
1,094,051	-		CCNA_01013	0.47	-0.1
1,094,077	+		CCNA_01013	0.51	+1.3
1,094,084	+		CCNA_01013	0.52	+1.8
1,094,089	+		CCNA_01013	0.53	+1.2
1,094,118	+		CCNA_01013	0.57	+0.6
1,094,126	-		CCNA_01013	0.58	-1.7
1,094,154	-		CCNA_01013	0.62	-0.7
1,094,221	+		CCNA_01013	0.71	+1.4
1,094,229	-				+1.5
1,094,350	-		CCNA_01013	0.90	-0.1
1,094,404	+				+1.0
1,094,409	+				+0.6
1,094,424	-				+1.7
1,094,441	-				+1.9
1,094,515	+		CCNA_R0023	0.83	+0.7
1,094,532	-				+2.1
1,094,556	-				+1.7
1,094,582	+				+0.0
1,094,635	+				-0.4
1,094,640	+				+0.4
1,094,640	+				-0.9
1,094,640	+				-1.0
1,094,640	+				+0.5
1,094,640	+				-1.0
1,094,648	-				-0.8
1,094,648	-				-1.9
1,094,659	-				-0.1
1,094,671	-				-0.5