Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00827 and CCNA_00828 are separated by 126 nucleotides CCNA_00828 and CCNA_00830 are separated by 306 nucleotides
CCNA_00827: CCNA_00827 - TonB-dependent receptor, at 888,079 to 891,006
_00827
CCNA_00828: CCNA_00828 - tryptophan halogenase, at 891,133 to 892,647
_00828
CCNA_00830: CCNA_00830 - beta-galactosidase, at 892,954 to 894,603
_00830
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 890.182 kb on + strand, within CCNA_00827 at 890.190 kb on - strand, within CCNA_00827 at 890.238 kb on + strand, within CCNA_00827 at 890.239 kb on - strand, within CCNA_00827 at 890.246 kb on - strand, within CCNA_00827 at 890.246 kb on - strand, within CCNA_00827 at 890.279 kb on - strand, within CCNA_00827 at 890.290 kb on - strand, within CCNA_00827 at 890.302 kb on + strand, within CCNA_00827 at 890.305 kb on - strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.306 kb on + strand, within CCNA_00827 at 890.307 kb on + strand, within CCNA_00827 at 890.311 kb on + strand, within CCNA_00827 at 890.314 kb on - strand, within CCNA_00827 at 890.314 kb on - strand, within CCNA_00827 at 890.314 kb on - strand, within CCNA_00827 at 890.315 kb on - strand, within CCNA_00827 at 890.316 kb on + strand, within CCNA_00827 at 890.331 kb on - strand, within CCNA_00827 at 890.331 kb on - strand, within CCNA_00827 at 890.370 kb on - strand, within CCNA_00827 at 890.416 kb on - strand, within CCNA_00827 at 890.441 kb on + strand, within CCNA_00827 at 890.465 kb on + strand, within CCNA_00827 at 890.490 kb on + strand, within CCNA_00827 at 890.509 kb on - strand, within CCNA_00827 at 890.600 kb on + strand, within CCNA_00827 at 890.600 kb on + strand, within CCNA_00827 at 890.608 kb on - strand, within CCNA_00827 at 890.609 kb on - strand, within CCNA_00827 at 890.616 kb on - strand, within CCNA_00827 at 890.650 kb on + strand, within CCNA_00827 at 890.701 kb on + strand, within CCNA_00827 at 890.701 kb on + strand, within CCNA_00827 at 890.705 kb on + strand, within CCNA_00827 at 890.705 kb on + strand, within CCNA_00827 at 890.709 kb on - strand, within CCNA_00827 at 890.709 kb on - strand, within CCNA_00827 at 890.712 kb on - strand, within CCNA_00827 at 890.712 kb on - strand, within CCNA_00827 at 890.716 kb on + strand at 890.801 kb on + strand at 890.818 kb on + strand at 890.836 kb on - strand at 890.845 kb on + strand at 890.853 kb on - strand at 890.892 kb on + strand at 890.898 kb on + strand at 890.900 kb on - strand at 890.900 kb on - strand at 890.901 kb on - strand at 890.918 kb on - strand at 890.918 kb on - strand at 890.938 kb on + strand at 890.938 kb on + strand at 890.986 kb on + strand at 890.991 kb on + strand at 891.000 kb on + strand at 891.000 kb on + strand at 891.000 kb on + strand at 891.000 kb on + strand at 891.007 kb on + strand at 891.019 kb on + strand at 891.025 kb on - strand at 891.027 kb on + strand at 891.027 kb on + strand at 891.030 kb on - strand at 891.030 kb on - strand at 891.074 kb on - strand at 891.094 kb on + strand at 891.102 kb on + strand at 891.102 kb on - strand at 891.102 kb on - strand at 891.102 kb on - strand at 891.102 kb on - strand at 891.110 kb on - strand at 891.110 kb on - strand at 891.179 kb on + strand at 891.184 kb on + strand at 891.217 kb on + strand at 891.236 kb on + strand at 891.244 kb on - strand at 891.245 kb on - strand at 891.245 kb on - strand at 891.275 kb on + strand at 891.317 kb on + strand, within CCNA_00828 at 891.325 kb on - strand, within CCNA_00828 at 891.392 kb on + strand, within CCNA_00828 at 891.417 kb on + strand, within CCNA_00828 at 891.434 kb on - strand, within CCNA_00828 at 891.437 kb on + strand, within CCNA_00828 at 891.440 kb on - strand, within CCNA_00828 at 891.456 kb on + strand, within CCNA_00828 at 891.471 kb on + strand, within CCNA_00828 at 891.496 kb on + strand, within CCNA_00828 at 891.517 kb on + strand, within CCNA_00828 at 891.543 kb on - strand, within CCNA_00828 at 891.595 kb on + strand, within CCNA_00828 at 891.595 kb on + strand, within CCNA_00828 at 891.595 kb on + strand, within CCNA_00828 at 891.600 kb on + strand, within CCNA_00828 at 891.603 kb on - strand, within CCNA_00828 at 891.609 kb on - strand, within CCNA_00828 at 891.622 kb on - strand, within CCNA_00828 at 891.643 kb on - strand, within CCNA_00828 at 891.708 kb on - strand, within CCNA_00828 at 891.739 kb on + strand, within CCNA_00828 at 891.812 kb on + strand, within CCNA_00828 at 891.907 kb on + strand, within CCNA_00828 at 891.907 kb on + strand, within CCNA_00828 at 891.956 kb on + strand, within CCNA_00828 at 891.973 kb on + strand, within CCNA_00828 at 891.980 kb on + strand, within CCNA_00828 at 891.980 kb on + strand, within CCNA_00828 at 891.981 kb on - strand, within CCNA_00828 at 891.985 kb on + strand, within CCNA_00828 at 891.985 kb on + strand, within CCNA_00828 at 891.985 kb on + strand, within CCNA_00828 at 891.985 kb on + strand, within CCNA_00828 at 891.986 kb on - strand, within CCNA_00828 at 891.993 kb on - strand, within CCNA_00828 at 891.993 kb on - strand, within CCNA_00828 at 891.993 kb on - strand, within CCNA_00828 at 891.993 kb on - strand, within CCNA_00828 at 892.005 kb on - strand, within CCNA_00828 at 892.119 kb on + strand, within CCNA_00828 at 892.126 kb on + strand, within CCNA_00828 at 892.131 kb on + strand, within CCNA_00828 at 892.134 kb on - strand, within CCNA_00828 at 892.148 kb on + strand, within CCNA_00828 at 892.172 kb on + strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.180 kb on - strand, within CCNA_00828 at 892.182 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.183 kb on + strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.191 kb on - strand, within CCNA_00828 at 892.229 kb on + strand, within CCNA_00828 at 892.229 kb on + strand, within CCNA_00828 at 892.252 kb on + strand, within CCNA_00828 at 892.262 kb on + strand, within CCNA_00828 at 892.285 kb on - strand, within CCNA_00828 at 892.306 kb on + strand, within CCNA_00828 at 892.311 kb on + strand, within CCNA_00828 at 892.311 kb on - strand, within CCNA_00828 at 892.341 kb on + strand, within CCNA_00828 at 892.369 kb on + strand, within CCNA_00828 at 892.369 kb on + strand, within CCNA_00828 at 892.369 kb on - strand, within CCNA_00828 at 892.391 kb on + strand, within CCNA_00828 at 892.399 kb on - strand, within CCNA_00828 at 892.421 kb on - strand, within CCNA_00828 at 892.443 kb on - strand, within CCNA_00828 at 892.448 kb on - strand, within CCNA_00828 at 892.458 kb on - strand, within CCNA_00828 at 892.485 kb on - strand, within CCNA_00828 at 892.514 kb on - strand at 892.551 kb on + strand at 892.561 kb on + strand at 892.561 kb on + strand at 892.569 kb on - strand at 892.569 kb on - strand at 892.574 kb on - strand at 892.606 kb on + strand at 892.606 kb on + strand at 892.629 kb on + strand at 892.636 kb on + strand at 892.636 kb on + strand at 892.644 kb on - strand at 892.644 kb on - strand at 892.649 kb on - strand at 892.655 kb on + strand at 892.660 kb on + strand at 892.678 kb on - strand at 892.721 kb on + strand at 892.733 kb on - strand at 892.743 kb on + strand at 892.771 kb on + strand at 892.797 kb on + strand at 892.799 kb on + strand at 892.799 kb on + strand at 892.799 kb on + strand at 892.816 kb on + strand at 892.824 kb on - strand at 892.874 kb on + strand at 892.882 kb on - strand at 892.882 kb on - strand at 892.900 kb on - strand at 892.911 kb on + strand at 892.941 kb on - strand at 892.982 kb on + strand at 893.013 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.028 kb on + strand at 893.031 kb on - strand at 893.031 kb on - strand at 893.031 kb on - strand at 893.031 kb on - strand at 893.031 kb on - strand at 893.036 kb on + strand at 893.036 kb on - strand at 893.036 kb on - strand at 893.144 kb on - strand, within CCNA_00830 at 893.168 kb on + strand, within CCNA_00830 at 893.196 kb on + strand, within CCNA_00830 at 893.210 kb on - strand, within CCNA_00830 at 893.228 kb on + strand, within CCNA_00830 at 893.228 kb on + strand, within CCNA_00830 at 893.235 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.236 kb on - strand, within CCNA_00830 at 893.238 kb on + strand, within CCNA_00830 at 893.246 kb on - strand, within CCNA_00830 at 893.251 kb on - strand, within CCNA_00830 at 893.255 kb on - strand, within CCNA_00830 at 893.282 kb on - strand, within CCNA_00830 at 893.384 kb on - strand, within CCNA_00830 at 893.399 kb on + strand, within CCNA_00830 at 893.417 kb on - strand, within CCNA_00830 at 893.417 kb on - strand, within CCNA_00830 at 893.442 kb on - strand, within CCNA_00830 at 893.475 kb on + strand, within CCNA_00830 at 893.483 kb on - strand, within CCNA_00830 at 893.519 kb on - strand, within CCNA_00830 at 893.524 kb on + strand, within CCNA_00830 at 893.524 kb on + strand, within CCNA_00830 at 893.524 kb on + strand, within CCNA_00830 at 893.524 kb on + strand, within CCNA_00830 at 893.532 kb on - strand, within CCNA_00830 at 893.532 kb on - strand, within CCNA_00830 at 893.537 kb on + strand, within CCNA_00830 at 893.559 kb on - strand, within CCNA_00830 at 893.611 kb on + strand, within CCNA_00830 at 893.619 kb on - strand, within CCNA_00830 at 893.635 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.640 kb on + strand, within CCNA_00830 at 893.643 kb on - strand, within CCNA_00830
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 890,182 + CCNA_00827 0.72 -1.6 890,190 - CCNA_00827 0.72 -0.2 890,238 + CCNA_00827 0.74 +0.9 890,239 - CCNA_00827 0.74 +0.4 890,246 - CCNA_00827 0.74 +2.2 890,246 - CCNA_00827 0.74 -0.0 890,279 - CCNA_00827 0.75 +1.2 890,290 - CCNA_00827 0.76 -0.9 890,302 + CCNA_00827 0.76 -0.6 890,305 - CCNA_00827 0.76 -0.7 890,306 + CCNA_00827 0.76 -0.9 890,306 + CCNA_00827 0.76 -0.8 890,306 + CCNA_00827 0.76 -1.1 890,306 + CCNA_00827 0.76 +0.9 890,306 + CCNA_00827 0.76 -0.5 890,306 + CCNA_00827 0.76 +2.2 890,307 + CCNA_00827 0.76 -0.8 890,311 + CCNA_00827 0.76 +0.6 890,314 - CCNA_00827 0.76 -1.4 890,314 - CCNA_00827 0.76 +0.0 890,314 - CCNA_00827 0.76 +0.7 890,315 - CCNA_00827 0.76 +0.5 890,316 + CCNA_00827 0.76 +1.8 890,331 - CCNA_00827 0.77 -0.0 890,331 - CCNA_00827 0.77 -2.0 890,370 - CCNA_00827 0.78 -2.1 890,416 - CCNA_00827 0.80 -0.8 890,441 + CCNA_00827 0.81 -0.3 890,465 + CCNA_00827 0.81 -0.4 890,490 + CCNA_00827 0.82 -0.1 890,509 - CCNA_00827 0.83 +1.0 890,600 + CCNA_00827 0.86 +0.1 890,600 + CCNA_00827 0.86 +1.2 890,608 - CCNA_00827 0.86 -1.2 890,609 - CCNA_00827 0.86 +0.8 890,616 - CCNA_00827 0.87 -1.4 890,650 + CCNA_00827 0.88 -0.1 890,701 + CCNA_00827 0.90 +0.3 890,701 + CCNA_00827 0.90 -1.9 890,705 + CCNA_00827 0.90 -0.4 890,705 + CCNA_00827 0.90 -0.0 890,709 - CCNA_00827 0.90 -0.6 890,709 - CCNA_00827 0.90 -0.6 890,712 - CCNA_00827 0.90 +0.2 890,712 - CCNA_00827 0.90 -1.0 890,716 + -0.5 890,801 + -0.2 890,818 + +0.3 890,836 - -1.3 890,845 + -0.4 890,853 - -0.3 890,892 + -0.3 890,898 + -0.1 890,900 - -1.1 890,900 - -0.1 890,901 - +0.2 890,918 - +0.0 890,918 - -1.6 890,938 + -0.2 890,938 + +0.8 890,986 + -0.3 890,991 + -0.3 891,000 + +0.7 891,000 + -0.4 891,000 + +0.6 891,000 + +0.0 891,007 + -2.2 891,019 + +0.3 891,025 - -0.0 891,027 + -1.4 891,027 + -2.2 891,030 - -0.2 891,030 - -1.9 891,074 - -0.8 891,094 + +0.1 891,102 + +0.7 891,102 - -0.6 891,102 - +1.2 891,102 - -0.1 891,102 - +0.9 891,110 - -0.8 891,110 - -0.4 891,179 + -0.9 891,184 + -1.5 891,217 + -1.4 891,236 + +0.2 891,244 - +1.6 891,245 - -1.4 891,245 - -1.3 891,275 + -0.2 891,317 + CCNA_00828 0.12 -0.8 891,325 - CCNA_00828 0.13 +0.9 891,392 + CCNA_00828 0.17 +0.4 891,417 + CCNA_00828 0.19 +0.2 891,434 - CCNA_00828 0.20 -2.6 891,437 + CCNA_00828 0.20 -0.4 891,440 - CCNA_00828 0.20 -0.6 891,456 + CCNA_00828 0.21 -0.2 891,471 + CCNA_00828 0.22 -0.7 891,496 + CCNA_00828 0.24 -1.4 891,517 + CCNA_00828 0.25 -0.8 891,543 - CCNA_00828 0.27 -1.3 891,595 + CCNA_00828 0.30 -0.7 891,595 + CCNA_00828 0.30 -0.9 891,595 + CCNA_00828 0.30 -3.7 891,600 + CCNA_00828 0.31 +0.4 891,603 - CCNA_00828 0.31 -0.1 891,609 - CCNA_00828 0.31 +0.2 891,622 - CCNA_00828 0.32 -1.0 891,643 - CCNA_00828 0.34 -1.7 891,708 - CCNA_00828 0.38 +0.4 891,739 + CCNA_00828 0.40 -0.2 891,812 + CCNA_00828 0.45 -1.4 891,907 + CCNA_00828 0.51 -2.7 891,907 + CCNA_00828 0.51 -0.3 891,956 + CCNA_00828 0.54 +0.6 891,973 + CCNA_00828 0.55 -0.7 891,980 + CCNA_00828 0.56 +1.4 891,980 + CCNA_00828 0.56 -0.0 891,981 - CCNA_00828 0.56 +2.7 891,985 + CCNA_00828 0.56 +0.1 891,985 + CCNA_00828 0.56 -2.7 891,985 + CCNA_00828 0.56 -0.5 891,985 + CCNA_00828 0.56 -0.8 891,986 - CCNA_00828 0.56 +0.5 891,993 - CCNA_00828 0.57 -2.1 891,993 - CCNA_00828 0.57 +1.2 891,993 - CCNA_00828 0.57 -1.0 891,993 - CCNA_00828 0.57 -1.8 892,005 - CCNA_00828 0.58 -0.6 892,119 + CCNA_00828 0.65 +0.2 892,126 + CCNA_00828 0.66 -1.5 892,131 + CCNA_00828 0.66 +0.8 892,134 - CCNA_00828 0.66 -0.2 892,148 + CCNA_00828 0.67 -1.5 892,172 + CCNA_00828 0.69 -1.0 892,180 - CCNA_00828 0.69 +0.4 892,180 - CCNA_00828 0.69 +0.4 892,180 - CCNA_00828 0.69 +0.5 892,180 - CCNA_00828 0.69 +0.0 892,180 - CCNA_00828 0.69 -1.5 892,180 - CCNA_00828 0.69 +0.0 892,182 + CCNA_00828 0.69 -2.7 892,183 + CCNA_00828 0.69 -2.5 892,183 + CCNA_00828 0.69 -1.3 892,183 + CCNA_00828 0.69 -0.6 892,183 + CCNA_00828 0.69 -1.1 892,183 + CCNA_00828 0.69 -0.9 892,183 + CCNA_00828 0.69 +0.2 892,183 + CCNA_00828 0.69 -0.9 892,191 - CCNA_00828 0.70 -1.0 892,191 - CCNA_00828 0.70 -0.4 892,191 - CCNA_00828 0.70 +0.1 892,191 - CCNA_00828 0.70 +1.5 892,191 - CCNA_00828 0.70 -1.5 892,229 + CCNA_00828 0.72 -0.6 892,229 + CCNA_00828 0.72 -0.7 892,252 + CCNA_00828 0.74 -0.8 892,262 + CCNA_00828 0.75 -2.0 892,285 - CCNA_00828 0.76 -1.8 892,306 + CCNA_00828 0.77 +1.0 892,311 + CCNA_00828 0.78 -1.8 892,311 - CCNA_00828 0.78 -2.0 892,341 + CCNA_00828 0.80 -1.6 892,369 + CCNA_00828 0.82 -1.6 892,369 + CCNA_00828 0.82 +0.2 892,369 - CCNA_00828 0.82 -1.7 892,391 + CCNA_00828 0.83 +0.0 892,399 - CCNA_00828 0.84 -0.1 892,421 - CCNA_00828 0.85 -0.9 892,443 - CCNA_00828 0.86 -1.0 892,448 - CCNA_00828 0.87 -1.4 892,458 - CCNA_00828 0.87 -0.4 892,485 - CCNA_00828 0.89 -1.1 892,514 - -0.7 892,551 + -0.6 892,561 + -0.5 892,561 + -0.7 892,569 - -1.2 892,569 - +0.4 892,574 - +1.1 892,606 + -1.1 892,606 + -0.0 892,629 + -0.4 892,636 + -1.2 892,636 + +1.2 892,644 - +0.5 892,644 - -1.8 892,649 - -1.0 892,655 + -1.7 892,660 + +0.3 892,678 - +1.3 892,721 + +0.7 892,733 - -0.1 892,743 + -0.0 892,771 + +0.9 892,797 + +1.6 892,799 + +2.5 892,799 + +0.4 892,799 + +0.2 892,816 + -0.1 892,824 - -1.2 892,874 + +1.5 892,882 - +0.4 892,882 - -2.6 892,900 - -0.9 892,911 + -0.6 892,941 - -0.2 892,982 + -0.2 893,013 + -0.5 893,023 + -1.0 893,023 + +0.5 893,023 + -1.1 893,028 + +0.2 893,031 - +0.2 893,031 - -0.9 893,031 - -0.7 893,031 - +0.7 893,031 - +0.4 893,036 + -0.9 893,036 - +0.1 893,036 - -0.6 893,144 - CCNA_00830 0.12 +0.6 893,168 + CCNA_00830 0.13 -2.0 893,196 + CCNA_00830 0.15 +0.0 893,210 - CCNA_00830 0.16 -1.2 893,228 + CCNA_00830 0.17 -0.4 893,228 + CCNA_00830 0.17 -1.4 893,235 - CCNA_00830 0.17 +0.3 893,236 - CCNA_00830 0.17 +2.0 893,236 - CCNA_00830 0.17 -0.4 893,236 - CCNA_00830 0.17 -1.5 893,236 - CCNA_00830 0.17 +1.2 893,236 - CCNA_00830 0.17 -2.0 893,238 + CCNA_00830 0.17 -2.2 893,246 - CCNA_00830 0.18 +1.6 893,251 - CCNA_00830 0.18 -0.8 893,255 - CCNA_00830 0.18 -0.7 893,282 - CCNA_00830 0.20 -0.8 893,384 - CCNA_00830 0.26 +0.9 893,399 + CCNA_00830 0.27 -0.5 893,417 - CCNA_00830 0.28 -1.4 893,417 - CCNA_00830 0.28 -1.5 893,442 - CCNA_00830 0.30 -0.7 893,475 + CCNA_00830 0.32 -2.5 893,483 - CCNA_00830 0.32 +3.2 893,519 - CCNA_00830 0.34 -2.0 893,524 + CCNA_00830 0.35 -1.8 893,524 + CCNA_00830 0.35 -0.1 893,524 + CCNA_00830 0.35 -1.0 893,524 + CCNA_00830 0.35 -0.5 893,532 - CCNA_00830 0.35 -0.1 893,532 - CCNA_00830 0.35 -1.2 893,537 + CCNA_00830 0.35 -1.3 893,559 - CCNA_00830 0.37 -0.4 893,611 + CCNA_00830 0.40 +0.6 893,619 - CCNA_00830 0.40 -0.0 893,635 + CCNA_00830 0.41 -0.3 893,640 + CCNA_00830 0.42 +0.2 893,640 + CCNA_00830 0.42 -1.0 893,640 + CCNA_00830 0.42 -0.8 893,640 + CCNA_00830 0.42 +1.2 893,640 + CCNA_00830 0.42 +1.0 893,640 + CCNA_00830 0.42 -2.2 893,640 + CCNA_00830 0.42 -0.6 893,643 - CCNA_00830 0.42 -1.2
Or see this region's nucleotide sequence