Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00810 and CCNA_00811 are separated by 31 nucleotides CCNA_00811 and CCNA_00812 are separated by 221 nucleotides CCNA_00812 and CCNA_00813 are separated by 128 nucleotides
CCNA_00810: CCNA_00810 - acetyl esterase, at 873,744 to 874,886
_00810
CCNA_00811: CCNA_00811 - TetR-family transcriptional regulator, at 874,918 to 875,553
_00811
CCNA_00812: CCNA_00812 - hypothetical protein, at 875,775 to 876,026
_00812
CCNA_00813: CCNA_00813 - flavin-binding monooxygenase-related protein, at 876,155 to 877,531
_00813
Position (kb) 875
876
877 Strain fitness (log2 ratio) -2
-1
0
1
2 at 874.775 kb on - strand at 874.805 kb on + strand at 874.824 kb on + strand at 874.824 kb on + strand at 874.824 kb on + strand at 874.824 kb on + strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.832 kb on - strand at 874.842 kb on - strand at 874.862 kb on + strand at 874.884 kb on + strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.924 kb on - strand at 874.927 kb on + strand at 874.956 kb on + strand at 874.966 kb on + strand at 875.068 kb on + strand, within CCNA_00811 at 875.097 kb on - strand, within CCNA_00811 at 875.101 kb on + strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.109 kb on - strand, within CCNA_00811 at 875.122 kb on + strand, within CCNA_00811 at 875.128 kb on - strand, within CCNA_00811 at 875.137 kb on - strand, within CCNA_00811 at 875.150 kb on + strand, within CCNA_00811 at 875.193 kb on - strand, within CCNA_00811 at 875.230 kb on + strand, within CCNA_00811 at 875.238 kb on - strand, within CCNA_00811 at 875.243 kb on - strand, within CCNA_00811 at 875.279 kb on - strand, within CCNA_00811 at 875.281 kb on - strand, within CCNA_00811 at 875.372 kb on - strand, within CCNA_00811 at 875.380 kb on + strand, within CCNA_00811 at 875.380 kb on + strand, within CCNA_00811 at 875.388 kb on - strand, within CCNA_00811 at 875.388 kb on - strand, within CCNA_00811 at 875.388 kb on - strand, within CCNA_00811 at 875.410 kb on + strand, within CCNA_00811 at 875.412 kb on - strand, within CCNA_00811 at 875.412 kb on - strand, within CCNA_00811 at 875.422 kb on + strand, within CCNA_00811 at 875.428 kb on + strand, within CCNA_00811 at 875.491 kb on - strand at 875.501 kb on - strand at 875.504 kb on + strand at 875.516 kb on - strand at 875.519 kb on + strand at 875.526 kb on - strand at 875.608 kb on + strand at 875.611 kb on - strand at 875.685 kb on - strand at 875.690 kb on + strand at 875.690 kb on + strand at 875.691 kb on + strand at 875.692 kb on - strand at 875.698 kb on - strand at 875.715 kb on + strand at 875.715 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.717 kb on + strand at 875.723 kb on - strand at 875.725 kb on - strand at 875.725 kb on - strand at 875.725 kb on - strand at 875.731 kb on - strand at 875.760 kb on + strand at 875.768 kb on - strand at 875.768 kb on - strand at 875.768 kb on - strand at 875.802 kb on + strand, within CCNA_00812 at 875.810 kb on - strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.841 kb on + strand, within CCNA_00812 at 875.846 kb on + strand, within CCNA_00812 at 875.846 kb on + strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.849 kb on - strand, within CCNA_00812 at 875.854 kb on - strand, within CCNA_00812 at 875.870 kb on + strand, within CCNA_00812 at 875.872 kb on - strand, within CCNA_00812 at 875.878 kb on - strand, within CCNA_00812 at 875.878 kb on - strand, within CCNA_00812 at 875.901 kb on + strand, within CCNA_00812 at 875.901 kb on + strand, within CCNA_00812 at 875.912 kb on + strand, within CCNA_00812 at 875.940 kb on - strand, within CCNA_00812 at 875.987 kb on + strand, within CCNA_00812 at 875.995 kb on - strand, within CCNA_00812 at 875.995 kb on - strand, within CCNA_00812 at 876.015 kb on + strand at 876.054 kb on - strand at 876.063 kb on + strand at 876.068 kb on + strand at 876.071 kb on - strand at 876.071 kb on - strand at 876.075 kb on + strand at 876.101 kb on - strand at 876.115 kb on + strand at 876.120 kb on + strand at 876.123 kb on - strand at 876.123 kb on - strand at 876.125 kb on + strand at 876.135 kb on + strand at 876.171 kb on + strand at 876.178 kb on - strand at 876.179 kb on - strand at 876.195 kb on + strand at 876.210 kb on + strand at 876.241 kb on - strand at 876.269 kb on - strand at 876.321 kb on + strand, within CCNA_00813 at 876.368 kb on + strand, within CCNA_00813 at 876.370 kb on + strand, within CCNA_00813 at 876.376 kb on - strand, within CCNA_00813 at 876.376 kb on - strand, within CCNA_00813 at 876.384 kb on + strand, within CCNA_00813 at 876.448 kb on - strand, within CCNA_00813 at 876.448 kb on - strand, within CCNA_00813 at 876.450 kb on + strand, within CCNA_00813 at 876.452 kb on - strand, within CCNA_00813 at 876.461 kb on + strand, within CCNA_00813 at 876.465 kb on + strand, within CCNA_00813 at 876.483 kb on - strand, within CCNA_00813 at 876.484 kb on - strand, within CCNA_00813 at 876.511 kb on + strand, within CCNA_00813 at 876.536 kb on + strand, within CCNA_00813 at 876.536 kb on - strand, within CCNA_00813 at 876.549 kb on - strand, within CCNA_00813 at 876.572 kb on - strand, within CCNA_00813 at 876.604 kb on - strand, within CCNA_00813 at 876.612 kb on + strand, within CCNA_00813 at 876.615 kb on - strand, within CCNA_00813 at 876.677 kb on - strand, within CCNA_00813 at 876.695 kb on + strand, within CCNA_00813 at 876.703 kb on - strand, within CCNA_00813 at 876.703 kb on - strand, within CCNA_00813 at 876.703 kb on - strand, within CCNA_00813 at 876.738 kb on - strand, within CCNA_00813 at 876.747 kb on + strand, within CCNA_00813 at 876.747 kb on + strand, within CCNA_00813 at 876.747 kb on + strand, within CCNA_00813 at 876.747 kb on + strand, within CCNA_00813 at 876.747 kb on + strand, within CCNA_00813 at 876.755 kb on - strand, within CCNA_00813 at 876.755 kb on - strand, within CCNA_00813 at 876.755 kb on - strand, within CCNA_00813 at 876.755 kb on - strand, within CCNA_00813 at 876.755 kb on - strand, within CCNA_00813 at 876.757 kb on + strand, within CCNA_00813 at 876.757 kb on + strand, within CCNA_00813 at 876.798 kb on + strand, within CCNA_00813 at 876.803 kb on + strand, within CCNA_00813 at 876.811 kb on - strand, within CCNA_00813 at 876.811 kb on - strand, within CCNA_00813 at 876.818 kb on - strand, within CCNA_00813 at 876.822 kb on - strand, within CCNA_00813 at 876.822 kb on - strand, within CCNA_00813 at 876.848 kb on - strand, within CCNA_00813 at 876.867 kb on + strand, within CCNA_00813 at 876.887 kb on + strand, within CCNA_00813 at 876.889 kb on + strand, within CCNA_00813 at 876.895 kb on - strand, within CCNA_00813 at 876.896 kb on - strand, within CCNA_00813 at 876.897 kb on - strand, within CCNA_00813 at 876.920 kb on - strand, within CCNA_00813 at 876.959 kb on + strand, within CCNA_00813 at 876.993 kb on - strand, within CCNA_00813
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 874,775 - +0.0 874,805 + +0.5 874,824 + -0.5 874,824 + +0.2 874,824 + +0.6 874,824 + +0.2 874,832 - +0.4 874,832 - -0.2 874,832 - +0.7 874,832 - +0.6 874,832 - -0.5 874,832 - +1.0 874,832 - +1.7 874,832 - -0.3 874,842 - +0.4 874,862 + +0.1 874,884 + +0.4 874,924 - -0.1 874,924 - +1.0 874,924 - +0.8 874,924 - +1.0 874,924 - +1.0 874,927 + -1.1 874,956 + -0.1 874,966 + -1.0 875,068 + CCNA_00811 0.24 +0.8 875,097 - CCNA_00811 0.28 +1.0 875,101 + CCNA_00811 0.29 +0.7 875,109 - CCNA_00811 0.30 +2.0 875,109 - CCNA_00811 0.30 +1.1 875,109 - CCNA_00811 0.30 +0.7 875,109 - CCNA_00811 0.30 +0.8 875,122 + CCNA_00811 0.32 -1.3 875,128 - CCNA_00811 0.33 +0.5 875,137 - CCNA_00811 0.34 +0.6 875,150 + CCNA_00811 0.36 +0.1 875,193 - CCNA_00811 0.43 +1.2 875,230 + CCNA_00811 0.49 -0.9 875,238 - CCNA_00811 0.50 +1.2 875,243 - CCNA_00811 0.51 +0.8 875,279 - CCNA_00811 0.57 +1.4 875,281 - CCNA_00811 0.57 +0.9 875,372 - CCNA_00811 0.71 +0.8 875,380 + CCNA_00811 0.73 +0.1 875,380 + CCNA_00811 0.73 -0.1 875,388 - CCNA_00811 0.74 -0.6 875,388 - CCNA_00811 0.74 +0.8 875,388 - CCNA_00811 0.74 +0.6 875,410 + CCNA_00811 0.77 -0.5 875,412 - CCNA_00811 0.78 -1.2 875,412 - CCNA_00811 0.78 +1.5 875,422 + CCNA_00811 0.79 +0.5 875,428 + CCNA_00811 0.80 +0.3 875,491 - +0.7 875,501 - +0.7 875,504 + -0.5 875,516 - +0.7 875,519 + -1.0 875,526 - +0.2 875,608 + +0.5 875,611 - +1.7 875,685 - -0.6 875,690 + +1.3 875,690 + +1.0 875,691 + -0.4 875,692 - -1.8 875,698 - -0.4 875,715 + -0.3 875,715 + -0.1 875,717 + +1.1 875,717 + +1.1 875,717 + +0.0 875,717 + +0.0 875,717 + -0.6 875,723 - -1.5 875,725 - -0.5 875,725 - -1.8 875,725 - -1.4 875,731 - +1.7 875,760 + +0.7 875,768 - +0.2 875,768 - +1.4 875,768 - +0.9 875,802 + CCNA_00812 0.11 -0.4 875,810 - CCNA_00812 0.14 +0.2 875,841 + CCNA_00812 0.26 -0.3 875,841 + CCNA_00812 0.26 -1.1 875,841 + CCNA_00812 0.26 +1.3 875,841 + CCNA_00812 0.26 -0.8 875,841 + CCNA_00812 0.26 -1.4 875,841 + CCNA_00812 0.26 -0.7 875,841 + CCNA_00812 0.26 -0.7 875,841 + CCNA_00812 0.26 -0.8 875,841 + CCNA_00812 0.26 +0.5 875,841 + CCNA_00812 0.26 +1.3 875,841 + CCNA_00812 0.26 -0.4 875,841 + CCNA_00812 0.26 +0.9 875,841 + CCNA_00812 0.26 +0.5 875,841 + CCNA_00812 0.26 +0.5 875,841 + CCNA_00812 0.26 -0.8 875,846 + CCNA_00812 0.28 +0.0 875,846 + CCNA_00812 0.28 -0.9 875,849 - CCNA_00812 0.29 -0.8 875,849 - CCNA_00812 0.29 +0.7 875,849 - CCNA_00812 0.29 -0.3 875,849 - CCNA_00812 0.29 +0.1 875,849 - CCNA_00812 0.29 +0.6 875,849 - CCNA_00812 0.29 -0.3 875,849 - CCNA_00812 0.29 -0.2 875,849 - CCNA_00812 0.29 +0.8 875,849 - CCNA_00812 0.29 -1.2 875,849 - CCNA_00812 0.29 -2.7 875,849 - CCNA_00812 0.29 +0.8 875,849 - CCNA_00812 0.29 +0.9 875,849 - CCNA_00812 0.29 -0.6 875,849 - CCNA_00812 0.29 -1.4 875,849 - CCNA_00812 0.29 -0.9 875,849 - CCNA_00812 0.29 -0.7 875,854 - CCNA_00812 0.31 +0.2 875,870 + CCNA_00812 0.38 -0.3 875,872 - CCNA_00812 0.38 -1.7 875,878 - CCNA_00812 0.41 +0.1 875,878 - CCNA_00812 0.41 -1.0 875,901 + CCNA_00812 0.50 -0.1 875,901 + CCNA_00812 0.50 -1.4 875,912 + CCNA_00812 0.54 -0.2 875,940 - CCNA_00812 0.65 -1.3 875,987 + CCNA_00812 0.84 +0.5 875,995 - CCNA_00812 0.87 -0.6 875,995 - CCNA_00812 0.87 +0.6 876,015 + +0.9 876,054 - +0.5 876,063 + -1.0 876,068 + +0.3 876,071 - -0.1 876,071 - +0.3 876,075 + +0.6 876,101 - -0.8 876,115 + +0.2 876,120 + -1.0 876,123 - -1.6 876,123 - +0.0 876,125 + -2.1 876,135 + -0.6 876,171 + +0.9 876,178 - +1.2 876,179 - +0.2 876,195 + -1.0 876,210 + +0.2 876,241 - -0.1 876,269 - -0.3 876,321 + CCNA_00813 0.12 +0.7 876,368 + CCNA_00813 0.15 -1.7 876,370 + CCNA_00813 0.16 -2.1 876,376 - CCNA_00813 0.16 +0.2 876,376 - CCNA_00813 0.16 -2.1 876,384 + CCNA_00813 0.17 -2.2 876,448 - CCNA_00813 0.21 -2.0 876,448 - CCNA_00813 0.21 -1.1 876,450 + CCNA_00813 0.21 +0.1 876,452 - CCNA_00813 0.22 -0.2 876,461 + CCNA_00813 0.22 +0.5 876,465 + CCNA_00813 0.23 -0.5 876,483 - CCNA_00813 0.24 +1.7 876,484 - CCNA_00813 0.24 -0.8 876,511 + CCNA_00813 0.26 -0.1 876,536 + CCNA_00813 0.28 +0.8 876,536 - CCNA_00813 0.28 -1.7 876,549 - CCNA_00813 0.29 -0.7 876,572 - CCNA_00813 0.30 +0.1 876,604 - CCNA_00813 0.33 -0.6 876,612 + CCNA_00813 0.33 -0.8 876,615 - CCNA_00813 0.33 +0.1 876,677 - CCNA_00813 0.38 -0.4 876,695 + CCNA_00813 0.39 -1.5 876,703 - CCNA_00813 0.40 -0.3 876,703 - CCNA_00813 0.40 -0.4 876,703 - CCNA_00813 0.40 -1.6 876,738 - CCNA_00813 0.42 -1.7 876,747 + CCNA_00813 0.43 +0.1 876,747 + CCNA_00813 0.43 -2.1 876,747 + CCNA_00813 0.43 +1.2 876,747 + CCNA_00813 0.43 -0.3 876,747 + CCNA_00813 0.43 +1.3 876,755 - CCNA_00813 0.44 +0.1 876,755 - CCNA_00813 0.44 +0.5 876,755 - CCNA_00813 0.44 -0.8 876,755 - CCNA_00813 0.44 -0.9 876,755 - CCNA_00813 0.44 -1.4 876,757 + CCNA_00813 0.44 -1.1 876,757 + CCNA_00813 0.44 -1.9 876,798 + CCNA_00813 0.47 -1.4 876,803 + CCNA_00813 0.47 -1.9 876,811 - CCNA_00813 0.48 -1.3 876,811 - CCNA_00813 0.48 -0.3 876,818 - CCNA_00813 0.48 +1.7 876,822 - CCNA_00813 0.48 -0.1 876,822 - CCNA_00813 0.48 +0.3 876,848 - CCNA_00813 0.50 -1.1 876,867 + CCNA_00813 0.52 -1.0 876,887 + CCNA_00813 0.53 +0.1 876,889 + CCNA_00813 0.53 +0.1 876,895 - CCNA_00813 0.54 -2.6 876,896 - CCNA_00813 0.54 -2.1 876,897 - CCNA_00813 0.54 -1.8 876,920 - CCNA_00813 0.56 -0.9 876,959 + CCNA_00813 0.58 -0.9 876,993 - CCNA_00813 0.61 -1.9
Or see this region's nucleotide sequence