Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00800 and CCNA_00801 are separated by 14 nucleotides CCNA_00801 and CCNA_00802 are separated by 18 nucleotides CCNA_00802 and CCNA_00803 are separated by 158 nucleotides CCNA_00803 and CCNA_00804 are separated by 64 nucleotides
CCNA_00800: CCNA_00800 - cytochrome bd-type quinol oxidase, subunit 1 cydA, at 864,829 to 866,391
_00800
CCNA_00801: CCNA_00801 - cytochrome bd-type quinol oxidase, subunit 2 cydB, at 866,406 to 867,557
_00801
CCNA_00802: CCNA_00802 - cyd operon protein YbgT, at 867,576 to 867,695
_00802
CCNA_00803: CCNA_00803 - chemotaxis protein cheW, at 867,854 to 868,309
_00803
CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859
_00804
Position (kb) 866
867
868 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 865.426 kb on + strand, within CCNA_00800 at 865.520 kb on + strand, within CCNA_00800 at 865.532 kb on + strand, within CCNA_00800 at 865.537 kb on + strand, within CCNA_00800 at 865.545 kb on - strand, within CCNA_00800 at 865.559 kb on - strand, within CCNA_00800 at 865.564 kb on - strand, within CCNA_00800 at 865.595 kb on + strand, within CCNA_00800 at 865.614 kb on + strand, within CCNA_00800 at 865.668 kb on + strand, within CCNA_00800 at 865.702 kb on + strand, within CCNA_00800 at 865.751 kb on + strand, within CCNA_00800 at 865.751 kb on + strand, within CCNA_00800 at 865.859 kb on + strand, within CCNA_00800 at 865.867 kb on - strand, within CCNA_00800 at 865.892 kb on - strand, within CCNA_00800 at 865.894 kb on - strand, within CCNA_00800 at 865.929 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.934 kb on + strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.942 kb on - strand, within CCNA_00800 at 865.989 kb on + strand, within CCNA_00800 at 865.997 kb on - strand, within CCNA_00800 at 865.997 kb on - strand, within CCNA_00800 at 865.997 kb on - strand, within CCNA_00800 at 866.044 kb on + strand, within CCNA_00800 at 866.090 kb on - strand, within CCNA_00800 at 866.119 kb on + strand, within CCNA_00800 at 866.124 kb on + strand, within CCNA_00800 at 866.183 kb on - strand, within CCNA_00800 at 866.193 kb on - strand, within CCNA_00800 at 866.265 kb on - strand at 866.266 kb on + strand at 866.268 kb on + strand at 866.283 kb on + strand at 866.291 kb on - strand at 866.308 kb on - strand at 866.337 kb on - strand at 866.343 kb on - strand at 866.352 kb on + strand at 866.386 kb on + strand at 866.386 kb on + strand at 866.386 kb on + strand at 866.386 kb on + strand at 866.386 kb on + strand at 866.386 kb on + strand at 866.386 kb on + strand at 866.386 kb on + strand at 866.386 kb on + strand at 866.394 kb on - strand at 866.394 kb on - strand at 866.394 kb on - strand at 866.394 kb on - strand at 866.394 kb on - strand at 866.394 kb on - strand at 866.394 kb on - strand at 866.446 kb on + strand at 866.484 kb on - strand at 866.517 kb on + strand at 866.525 kb on - strand, within CCNA_00801 at 866.540 kb on - strand, within CCNA_00801 at 866.592 kb on + strand, within CCNA_00801 at 866.602 kb on + strand, within CCNA_00801 at 866.602 kb on + strand, within CCNA_00801 at 866.610 kb on - strand, within CCNA_00801 at 866.634 kb on + strand, within CCNA_00801 at 866.645 kb on + strand, within CCNA_00801 at 866.653 kb on - strand, within CCNA_00801 at 866.755 kb on - strand, within CCNA_00801 at 866.818 kb on + strand, within CCNA_00801 at 866.818 kb on + strand at 866.818 kb on - strand, within CCNA_00801 at 866.823 kb on + strand, within CCNA_00801 at 866.823 kb on + strand, within CCNA_00801 at 866.823 kb on + strand, within CCNA_00801 at 866.823 kb on + strand, within CCNA_00801 at 866.823 kb on + strand, within CCNA_00801 at 866.823 kb on + strand, within CCNA_00801 at 866.828 kb on + strand, within CCNA_00801 at 866.831 kb on - strand, within CCNA_00801 at 866.831 kb on - strand, within CCNA_00801 at 866.831 kb on - strand, within CCNA_00801 at 866.831 kb on - strand, within CCNA_00801 at 866.831 kb on - strand, within CCNA_00801 at 866.835 kb on + strand, within CCNA_00801 at 866.880 kb on + strand, within CCNA_00801 at 866.909 kb on - strand, within CCNA_00801 at 866.927 kb on + strand, within CCNA_00801 at 866.970 kb on + strand, within CCNA_00801 at 866.970 kb on + strand, within CCNA_00801 at 866.970 kb on + strand, within CCNA_00801 at 866.978 kb on - strand, within CCNA_00801 at 866.978 kb on - strand, within CCNA_00801 at 866.978 kb on - strand, within CCNA_00801 at 866.987 kb on + strand, within CCNA_00801 at 866.993 kb on + strand, within CCNA_00801 at 866.995 kb on - strand, within CCNA_00801 at 867.039 kb on + strand, within CCNA_00801 at 867.047 kb on - strand, within CCNA_00801 at 867.047 kb on - strand, within CCNA_00801 at 867.057 kb on - strand, within CCNA_00801 at 867.081 kb on - strand, within CCNA_00801 at 867.119 kb on + strand, within CCNA_00801 at 867.122 kb on - strand, within CCNA_00801 at 867.122 kb on - strand, within CCNA_00801 at 867.228 kb on + strand, within CCNA_00801 at 867.236 kb on - strand, within CCNA_00801 at 867.257 kb on - strand, within CCNA_00801 at 867.259 kb on + strand, within CCNA_00801 at 867.259 kb on + strand, within CCNA_00801 at 867.267 kb on - strand, within CCNA_00801 at 867.334 kb on + strand, within CCNA_00801 at 867.363 kb on + strand, within CCNA_00801 at 867.381 kb on - strand, within CCNA_00801 at 867.381 kb on - strand, within CCNA_00801 at 867.381 kb on - strand, within CCNA_00801 at 867.399 kb on + strand, within CCNA_00801 at 867.399 kb on - strand, within CCNA_00801 at 867.476 kb on + strand at 867.476 kb on + strand at 867.476 kb on + strand at 867.484 kb on - strand at 867.499 kb on - strand at 867.512 kb on + strand at 867.531 kb on - strand at 867.531 kb on - strand at 867.541 kb on + strand at 867.542 kb on - strand at 867.549 kb on - strand at 867.549 kb on - strand at 867.549 kb on - strand at 867.551 kb on + strand at 867.551 kb on + strand at 867.559 kb on - strand at 867.565 kb on - strand at 867.576 kb on + strand at 867.609 kb on - strand, within CCNA_00802 at 867.629 kb on + strand, within CCNA_00802 at 867.637 kb on - strand, within CCNA_00802 at 867.649 kb on + strand, within CCNA_00802 at 867.649 kb on + strand, within CCNA_00802 at 867.657 kb on - strand, within CCNA_00802 at 867.678 kb on + strand, within CCNA_00802 at 867.678 kb on + strand, within CCNA_00802 at 867.678 kb on + strand, within CCNA_00802 at 867.686 kb on - strand at 867.686 kb on - strand at 867.696 kb on + strand at 867.719 kb on - strand at 867.745 kb on + strand at 867.807 kb on - strand at 867.860 kb on + strand at 867.876 kb on - strand at 867.879 kb on + strand at 867.919 kb on - strand, within CCNA_00803 at 867.924 kb on - strand, within CCNA_00803 at 867.928 kb on + strand, within CCNA_00803 at 867.954 kb on + strand, within CCNA_00803 at 867.954 kb on + strand, within CCNA_00803 at 867.984 kb on + strand, within CCNA_00803 at 868.012 kb on - strand, within CCNA_00803 at 868.024 kb on + strand, within CCNA_00803 at 868.071 kb on - strand, within CCNA_00803 at 868.076 kb on + strand, within CCNA_00803 at 868.084 kb on - strand, within CCNA_00803 at 868.100 kb on + strand, within CCNA_00803 at 868.143 kb on - strand, within CCNA_00803 at 868.163 kb on - strand at 868.176 kb on + strand, within CCNA_00803 at 868.188 kb on + strand, within CCNA_00803 at 868.226 kb on - strand, within CCNA_00803 at 868.269 kb on + strand at 868.286 kb on + strand at 868.371 kb on + strand at 868.414 kb on - strand at 868.416 kb on + strand at 868.514 kb on - strand, within CCNA_00804
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 865,426 + CCNA_00800 0.38 +0.7 865,520 + CCNA_00800 0.44 -1.6 865,532 + CCNA_00800 0.45 -0.2 865,537 + CCNA_00800 0.45 -1.1 865,545 - CCNA_00800 0.46 -0.7 865,559 - CCNA_00800 0.47 -0.3 865,564 - CCNA_00800 0.47 -0.0 865,595 + CCNA_00800 0.49 -1.3 865,614 + CCNA_00800 0.50 -0.5 865,668 + CCNA_00800 0.54 -0.1 865,702 + CCNA_00800 0.56 +1.5 865,751 + CCNA_00800 0.59 +0.5 865,751 + CCNA_00800 0.59 -0.4 865,859 + CCNA_00800 0.66 +0.3 865,867 - CCNA_00800 0.66 -0.9 865,892 - CCNA_00800 0.68 -0.5 865,894 - CCNA_00800 0.68 +0.5 865,929 + CCNA_00800 0.70 +2.3 865,934 + CCNA_00800 0.71 -0.2 865,934 + CCNA_00800 0.71 +1.3 865,934 + CCNA_00800 0.71 -0.6 865,934 + CCNA_00800 0.71 -0.5 865,934 + CCNA_00800 0.71 +0.3 865,934 + CCNA_00800 0.71 +0.3 865,934 + CCNA_00800 0.71 -0.2 865,934 + CCNA_00800 0.71 -0.5 865,934 + CCNA_00800 0.71 +0.1 865,934 + CCNA_00800 0.71 -0.4 865,934 + CCNA_00800 0.71 -0.0 865,934 + CCNA_00800 0.71 +0.5 865,942 - CCNA_00800 0.71 +0.6 865,942 - CCNA_00800 0.71 +0.1 865,942 - CCNA_00800 0.71 -1.0 865,942 - CCNA_00800 0.71 +0.5 865,942 - CCNA_00800 0.71 -1.0 865,942 - CCNA_00800 0.71 +0.7 865,942 - CCNA_00800 0.71 -0.7 865,942 - CCNA_00800 0.71 -0.0 865,942 - CCNA_00800 0.71 +0.8 865,942 - CCNA_00800 0.71 +0.1 865,942 - CCNA_00800 0.71 -1.1 865,989 + CCNA_00800 0.74 -0.8 865,997 - CCNA_00800 0.75 +0.1 865,997 - CCNA_00800 0.75 -1.0 865,997 - CCNA_00800 0.75 -0.5 866,044 + CCNA_00800 0.78 +0.1 866,090 - CCNA_00800 0.81 -0.4 866,119 + CCNA_00800 0.83 -1.6 866,124 + CCNA_00800 0.83 +0.5 866,183 - CCNA_00800 0.87 -0.0 866,193 - CCNA_00800 0.87 +1.0 866,265 - -1.0 866,266 + -0.0 866,268 + +0.7 866,283 + -0.7 866,291 - +0.5 866,308 - -0.4 866,337 - -1.7 866,343 - -1.1 866,352 + +0.2 866,386 + +0.5 866,386 + +0.3 866,386 + +0.8 866,386 + +0.9 866,386 + +1.2 866,386 + +0.5 866,386 + +1.5 866,386 + -1.4 866,386 + +1.0 866,394 - +0.9 866,394 - +1.4 866,394 - +0.6 866,394 - +0.8 866,394 - -0.7 866,394 - +0.9 866,394 - +0.8 866,446 + +0.5 866,484 - -0.7 866,517 + -1.2 866,525 - CCNA_00801 0.10 -0.0 866,540 - CCNA_00801 0.12 -0.4 866,592 + CCNA_00801 0.16 -0.2 866,602 + CCNA_00801 0.17 +0.7 866,602 + CCNA_00801 0.17 +0.5 866,610 - CCNA_00801 0.18 +0.1 866,634 + CCNA_00801 0.20 -1.6 866,645 + CCNA_00801 0.21 +0.5 866,653 - CCNA_00801 0.21 -0.4 866,755 - CCNA_00801 0.30 -1.0 866,818 + CCNA_00801 0.36 -0.2 866,818 + +1.7 866,818 - CCNA_00801 0.36 +0.8 866,823 + CCNA_00801 0.36 -0.0 866,823 + CCNA_00801 0.36 +0.5 866,823 + CCNA_00801 0.36 -0.0 866,823 + CCNA_00801 0.36 -1.8 866,823 + CCNA_00801 0.36 -0.6 866,823 + CCNA_00801 0.36 -1.0 866,828 + CCNA_00801 0.37 +1.0 866,831 - CCNA_00801 0.37 +0.2 866,831 - CCNA_00801 0.37 +0.5 866,831 - CCNA_00801 0.37 -1.0 866,831 - CCNA_00801 0.37 +0.3 866,831 - CCNA_00801 0.37 +0.5 866,835 + CCNA_00801 0.37 +0.3 866,880 + CCNA_00801 0.41 -0.7 866,909 - CCNA_00801 0.44 -0.4 866,927 + CCNA_00801 0.45 +1.7 866,970 + CCNA_00801 0.49 -1.1 866,970 + CCNA_00801 0.49 +1.0 866,970 + CCNA_00801 0.49 -0.7 866,978 - CCNA_00801 0.50 -2.0 866,978 - CCNA_00801 0.50 +0.3 866,978 - CCNA_00801 0.50 -0.6 866,987 + CCNA_00801 0.50 +0.7 866,993 + CCNA_00801 0.51 +1.0 866,995 - CCNA_00801 0.51 -1.0 867,039 + CCNA_00801 0.55 -0.4 867,047 - CCNA_00801 0.56 -0.0 867,047 - CCNA_00801 0.56 +1.7 867,057 - CCNA_00801 0.57 -0.9 867,081 - CCNA_00801 0.59 -0.2 867,119 + CCNA_00801 0.62 -1.0 867,122 - CCNA_00801 0.62 -1.0 867,122 - CCNA_00801 0.62 -1.1 867,228 + CCNA_00801 0.71 -1.9 867,236 - CCNA_00801 0.72 -0.2 867,257 - CCNA_00801 0.74 -1.4 867,259 + CCNA_00801 0.74 -0.6 867,259 + CCNA_00801 0.74 -0.0 867,267 - CCNA_00801 0.75 +1.0 867,334 + CCNA_00801 0.81 -0.3 867,363 + CCNA_00801 0.83 -1.7 867,381 - CCNA_00801 0.85 -0.7 867,381 - CCNA_00801 0.85 -0.5 867,381 - CCNA_00801 0.85 -1.1 867,399 + CCNA_00801 0.86 +0.1 867,399 - CCNA_00801 0.86 +1.7 867,476 + -0.6 867,476 + -0.9 867,476 + -2.1 867,484 - -0.5 867,499 - -1.8 867,512 + +0.0 867,531 - +0.1 867,531 - +0.1 867,541 + +0.7 867,542 - -0.8 867,549 - -0.3 867,549 - +0.2 867,549 - -0.9 867,551 + +0.6 867,551 + +0.4 867,559 - -1.7 867,565 - +0.0 867,576 + +0.5 867,609 - CCNA_00802 0.28 +0.0 867,629 + CCNA_00802 0.44 -0.2 867,637 - CCNA_00802 0.51 +0.3 867,649 + CCNA_00802 0.61 +0.9 867,649 + CCNA_00802 0.61 -0.1 867,657 - CCNA_00802 0.68 -1.5 867,678 + CCNA_00802 0.85 +0.6 867,678 + CCNA_00802 0.85 +0.5 867,678 + CCNA_00802 0.85 +1.4 867,686 - -1.2 867,686 - +0.1 867,696 + +0.9 867,719 - -0.8 867,745 + +0.9 867,807 - -0.5 867,860 + +1.5 867,876 - +1.7 867,879 + +0.8 867,919 - CCNA_00803 0.14 +0.1 867,924 - CCNA_00803 0.15 -1.8 867,928 + CCNA_00803 0.16 +1.5 867,954 + CCNA_00803 0.22 +1.8 867,954 + CCNA_00803 0.22 +1.5 867,984 + CCNA_00803 0.29 +1.4 868,012 - CCNA_00803 0.35 +0.4 868,024 + CCNA_00803 0.37 +1.4 868,071 - CCNA_00803 0.48 +0.1 868,076 + CCNA_00803 0.49 +1.6 868,084 - CCNA_00803 0.50 +0.4 868,100 + CCNA_00803 0.54 +2.3 868,143 - CCNA_00803 0.63 -0.1 868,163 - +0.9 868,176 + CCNA_00803 0.71 +2.8 868,188 + CCNA_00803 0.73 +2.0 868,226 - CCNA_00803 0.82 +0.9 868,269 + +1.8 868,286 + +1.6 868,371 + +0.7 868,414 - +0.8 868,416 + -0.5 868,514 - CCNA_00804 0.29 +1.3
Or see this region's nucleotide sequence