Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00800

Experiment: PYE with Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00799 and CCNA_00800 are separated by 123 nucleotidesCCNA_00800 and CCNA_00801 are separated by 14 nucleotides CCNA_00799: CCNA_00799 - ABC transporter, ATP-binding protein cydD, at 863,065 to 864,705 _00799 CCNA_00800: CCNA_00800 - cytochrome bd-type quinol oxidase, subunit 1 cydA, at 864,829 to 866,391 _00800 CCNA_00801: CCNA_00801 - cytochrome bd-type quinol oxidase, subunit 2 cydB, at 866,406 to 867,557 _00801 Position (kb) 864 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 863.843 kb on - strand, within CCNA_00799at 863.925 kb on - strand, within CCNA_00799at 863.957 kb on + strand, within CCNA_00799at 863.957 kb on + strand, within CCNA_00799at 864.013 kb on + strand, within CCNA_00799at 864.015 kb on - strand, within CCNA_00799at 864.022 kb on + strand, within CCNA_00799at 864.030 kb on - strand, within CCNA_00799at 864.030 kb on - strand, within CCNA_00799at 864.030 kb on - strand, within CCNA_00799at 864.035 kb on - strand, within CCNA_00799at 864.051 kb on + strand, within CCNA_00799at 864.107 kb on - strand, within CCNA_00799at 864.119 kb on + strand, within CCNA_00799at 864.119 kb on + strand, within CCNA_00799at 864.127 kb on - strand, within CCNA_00799at 864.173 kb on - strand, within CCNA_00799at 864.186 kb on + strand, within CCNA_00799at 864.186 kb on + strand, within CCNA_00799at 864.247 kb on + strand, within CCNA_00799at 864.264 kb on - strand, within CCNA_00799at 864.277 kb on - strand, within CCNA_00799at 864.323 kb on + strand, within CCNA_00799at 864.331 kb on - strand, within CCNA_00799at 864.335 kb on - strand, within CCNA_00799at 864.335 kb on - strand, within CCNA_00799at 864.380 kb on + strand, within CCNA_00799at 864.391 kb on + strand, within CCNA_00799at 864.407 kb on + strand, within CCNA_00799at 864.455 kb on + strand, within CCNA_00799at 864.635 kb on + strandat 864.656 kb on - strandat 864.659 kb on + strandat 864.659 kb on + strandat 864.659 kb on + strandat 864.661 kb on - strandat 864.703 kb on + strandat 864.708 kb on + strandat 864.711 kb on - strandat 864.712 kb on + strandat 864.713 kb on + strandat 864.716 kb on - strandat 864.721 kb on - strandat 864.733 kb on - strandat 864.761 kb on + strandat 864.761 kb on + strandat 864.761 kb on + strandat 864.761 kb on + strandat 864.769 kb on - strandat 864.769 kb on - strandat 864.770 kb on - strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.775 kb on - strandat 864.780 kb on - strandat 864.780 kb on - strandat 864.780 kb on - strandat 864.780 kb on - strandat 864.823 kb on - strandat 864.825 kb on + strandat 864.841 kb on + strandat 864.841 kb on + strandat 864.841 kb on + strandat 864.849 kb on - strandat 864.849 kb on - strandat 864.849 kb on - strandat 864.850 kb on - strandat 864.909 kb on - strandat 864.928 kb on - strandat 864.980 kb on + strandat 864.990 kb on + strand, within CCNA_00800at 864.990 kb on + strand, within CCNA_00800at 864.990 kb on + strand, within CCNA_00800at 864.990 kb on + strand, within CCNA_00800at 864.998 kb on - strand, within CCNA_00800at 864.998 kb on - strand, within CCNA_00800at 864.998 kb on - strand, within CCNA_00800at 865.016 kb on + strand, within CCNA_00800at 865.071 kb on - strand, within CCNA_00800at 865.073 kb on + strand, within CCNA_00800at 865.073 kb on + strand, within CCNA_00800at 865.192 kb on - strand, within CCNA_00800at 865.193 kb on - strand, within CCNA_00800at 865.194 kb on + strand, within CCNA_00800at 865.194 kb on + strand, within CCNA_00800at 865.194 kb on + strand, within CCNA_00800at 865.194 kb on + strand, within CCNA_00800at 865.202 kb on - strand, within CCNA_00800at 865.238 kb on + strand, within CCNA_00800at 865.244 kb on - strand, within CCNA_00800at 865.252 kb on + strand, within CCNA_00800at 865.303 kb on + strand, within CCNA_00800at 865.313 kb on - strand, within CCNA_00800at 865.351 kb on + strand, within CCNA_00800at 865.359 kb on - strand, within CCNA_00800at 865.374 kb on + strand, within CCNA_00800at 865.382 kb on - strand, within CCNA_00800at 865.382 kb on - strand, within CCNA_00800at 865.392 kb on + strand, within CCNA_00800at 865.426 kb on + strand, within CCNA_00800at 865.520 kb on + strand, within CCNA_00800at 865.532 kb on + strand, within CCNA_00800at 865.537 kb on + strand, within CCNA_00800at 865.545 kb on - strand, within CCNA_00800at 865.559 kb on - strand, within CCNA_00800at 865.564 kb on - strand, within CCNA_00800at 865.595 kb on + strand, within CCNA_00800at 865.614 kb on + strand, within CCNA_00800at 865.668 kb on + strand, within CCNA_00800at 865.702 kb on + strand, within CCNA_00800at 865.751 kb on + strand, within CCNA_00800at 865.751 kb on + strand, within CCNA_00800at 865.859 kb on + strand, within CCNA_00800at 865.867 kb on - strand, within CCNA_00800at 865.892 kb on - strand, within CCNA_00800at 865.894 kb on - strand, within CCNA_00800at 865.929 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.989 kb on + strand, within CCNA_00800at 865.997 kb on - strand, within CCNA_00800at 865.997 kb on - strand, within CCNA_00800at 865.997 kb on - strand, within CCNA_00800at 866.044 kb on + strand, within CCNA_00800at 866.090 kb on - strand, within CCNA_00800at 866.119 kb on + strand, within CCNA_00800at 866.124 kb on + strand, within CCNA_00800at 866.183 kb on - strand, within CCNA_00800at 866.193 kb on - strand, within CCNA_00800at 866.265 kb on - strandat 866.266 kb on + strandat 866.268 kb on + strandat 866.283 kb on + strandat 866.291 kb on - strandat 866.308 kb on - strandat 866.337 kb on - strandat 866.343 kb on - strandat 866.352 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.446 kb on + strandat 866.484 kb on - strandat 866.517 kb on + strandat 866.525 kb on - strand, within CCNA_00801at 866.540 kb on - strand, within CCNA_00801at 866.592 kb on + strand, within CCNA_00801at 866.602 kb on + strand, within CCNA_00801at 866.602 kb on + strand, within CCNA_00801at 866.610 kb on - strand, within CCNA_00801at 866.634 kb on + strand, within CCNA_00801at 866.645 kb on + strand, within CCNA_00801at 866.653 kb on - strand, within CCNA_00801at 866.755 kb on - strand, within CCNA_00801at 866.818 kb on + strand, within CCNA_00801at 866.818 kb on + strandat 866.818 kb on - strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.828 kb on + strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.835 kb on + strand, within CCNA_00801at 866.880 kb on + strand, within CCNA_00801at 866.909 kb on - strand, within CCNA_00801at 866.927 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.987 kb on + strand, within CCNA_00801at 866.993 kb on + strand, within CCNA_00801at 866.995 kb on - strand, within CCNA_00801at 867.039 kb on + strand, within CCNA_00801at 867.047 kb on - strand, within CCNA_00801at 867.047 kb on - strand, within CCNA_00801at 867.057 kb on - strand, within CCNA_00801at 867.081 kb on - strand, within CCNA_00801at 867.119 kb on + strand, within CCNA_00801at 867.122 kb on - strand, within CCNA_00801at 867.122 kb on - strand, within CCNA_00801at 867.228 kb on + strand, within CCNA_00801at 867.236 kb on - strand, within CCNA_00801at 867.257 kb on - strand, within CCNA_00801at 867.259 kb on + strand, within CCNA_00801at 867.259 kb on + strand, within CCNA_00801at 867.267 kb on - strand, within CCNA_00801at 867.334 kb on + strand, within CCNA_00801at 867.363 kb on + strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml
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863,843 - CCNA_00799 0.47 -1.0
863,925 - CCNA_00799 0.52 -1.1
863,957 + CCNA_00799 0.54 +0.3
863,957 + CCNA_00799 0.54 -0.9
864,013 + CCNA_00799 0.58 +0.5
864,015 - CCNA_00799 0.58 +1.0
864,022 + CCNA_00799 0.58 -1.1
864,030 - CCNA_00799 0.59 -0.2
864,030 - CCNA_00799 0.59 -0.6
864,030 - CCNA_00799 0.59 +0.3
864,035 - CCNA_00799 0.59 +0.1
864,051 + CCNA_00799 0.60 -1.3
864,107 - CCNA_00799 0.63 -0.9
864,119 + CCNA_00799 0.64 +0.7
864,119 + CCNA_00799 0.64 +0.1
864,127 - CCNA_00799 0.65 -0.0
864,173 - CCNA_00799 0.68 -0.2
864,186 + CCNA_00799 0.68 -0.9
864,186 + CCNA_00799 0.68 -0.5
864,247 + CCNA_00799 0.72 -0.0
864,264 - CCNA_00799 0.73 -0.0
864,277 - CCNA_00799 0.74 +2.1
864,323 + CCNA_00799 0.77 -1.0
864,331 - CCNA_00799 0.77 -2.1
864,335 - CCNA_00799 0.77 -0.0
864,335 - CCNA_00799 0.77 -1.4
864,380 + CCNA_00799 0.80 -0.3
864,391 + CCNA_00799 0.81 +0.3
864,407 + CCNA_00799 0.82 +0.3
864,455 + CCNA_00799 0.85 +1.0
864,635 + +1.6
864,656 - +0.1
864,659 + -1.5
864,659 + +0.2
864,659 + -1.1
864,661 - -1.4
864,703 + -1.1
864,708 + -0.6
864,711 - +0.2
864,712 + -0.0
864,713 + -1.0
864,716 - +0.6
864,721 - +0.6
864,733 - +0.9
864,761 + +0.1
864,761 + -0.3
864,761 + -0.0
864,761 + -0.4
864,769 - -0.8
864,769 - +0.5
864,770 - +0.1
864,772 + -0.6
864,772 + -2.2
864,772 + -1.1
864,772 + -1.2
864,772 + -0.2
864,772 + -0.3
864,775 - +0.3
864,780 - -0.5
864,780 - +1.0
864,780 - -0.5
864,780 - -0.3
864,823 - -0.6
864,825 + -0.4
864,841 + -1.0
864,841 + -0.5
864,841 + -2.0
864,849 - -0.9
864,849 - -1.2
864,849 - -0.2
864,850 - -0.3
864,909 - -1.2
864,928 - +0.7
864,980 + -0.8
864,990 + CCNA_00800 0.10 +0.7
864,990 + CCNA_00800 0.10 -0.5
864,990 + CCNA_00800 0.10 -0.3
864,990 + CCNA_00800 0.10 -1.0
864,998 - CCNA_00800 0.11 -0.0
864,998 - CCNA_00800 0.11 -0.1
864,998 - CCNA_00800 0.11 +1.3
865,016 + CCNA_00800 0.12 +0.9
865,071 - CCNA_00800 0.15 +0.1
865,073 + CCNA_00800 0.16 -0.6
865,073 + CCNA_00800 0.16 +0.5
865,192 - CCNA_00800 0.23 -0.5
865,193 - CCNA_00800 0.23 -1.5
865,194 + CCNA_00800 0.23 +1.0
865,194 + CCNA_00800 0.23 -1.4
865,194 + CCNA_00800 0.23 -0.5
865,194 + CCNA_00800 0.23 +0.3
865,202 - CCNA_00800 0.24 -1.6
865,238 + CCNA_00800 0.26 -1.2
865,244 - CCNA_00800 0.27 +0.5
865,252 + CCNA_00800 0.27 +0.7
865,303 + CCNA_00800 0.30 +1.3
865,313 - CCNA_00800 0.31 +1.7
865,351 + CCNA_00800 0.33 -0.7
865,359 - CCNA_00800 0.34 -0.5
865,374 + CCNA_00800 0.35 -0.6
865,382 - CCNA_00800 0.35 -2.3
865,382 - CCNA_00800 0.35 -0.4
865,392 + CCNA_00800 0.36 -0.7
865,426 + CCNA_00800 0.38 +0.7
865,520 + CCNA_00800 0.44 -1.6
865,532 + CCNA_00800 0.45 -0.2
865,537 + CCNA_00800 0.45 -1.1
865,545 - CCNA_00800 0.46 -0.7
865,559 - CCNA_00800 0.47 -0.3
865,564 - CCNA_00800 0.47 -0.0
865,595 + CCNA_00800 0.49 -1.3
865,614 + CCNA_00800 0.50 -0.5
865,668 + CCNA_00800 0.54 -0.1
865,702 + CCNA_00800 0.56 +1.5
865,751 + CCNA_00800 0.59 +0.5
865,751 + CCNA_00800 0.59 -0.4
865,859 + CCNA_00800 0.66 +0.3
865,867 - CCNA_00800 0.66 -0.9
865,892 - CCNA_00800 0.68 -0.5
865,894 - CCNA_00800 0.68 +0.5
865,929 + CCNA_00800 0.70 +2.3
865,934 + CCNA_00800 0.71 -0.2
865,934 + CCNA_00800 0.71 +1.3
865,934 + CCNA_00800 0.71 -0.6
865,934 + CCNA_00800 0.71 -0.5
865,934 + CCNA_00800 0.71 +0.3
865,934 + CCNA_00800 0.71 +0.3
865,934 + CCNA_00800 0.71 -0.2
865,934 + CCNA_00800 0.71 -0.5
865,934 + CCNA_00800 0.71 +0.1
865,934 + CCNA_00800 0.71 -0.4
865,934 + CCNA_00800 0.71 -0.0
865,934 + CCNA_00800 0.71 +0.5
865,942 - CCNA_00800 0.71 +0.6
865,942 - CCNA_00800 0.71 +0.1
865,942 - CCNA_00800 0.71 -1.0
865,942 - CCNA_00800 0.71 +0.5
865,942 - CCNA_00800 0.71 -1.0
865,942 - CCNA_00800 0.71 +0.7
865,942 - CCNA_00800 0.71 -0.7
865,942 - CCNA_00800 0.71 -0.0
865,942 - CCNA_00800 0.71 +0.8
865,942 - CCNA_00800 0.71 +0.1
865,942 - CCNA_00800 0.71 -1.1
865,989 + CCNA_00800 0.74 -0.8
865,997 - CCNA_00800 0.75 +0.1
865,997 - CCNA_00800 0.75 -1.0
865,997 - CCNA_00800 0.75 -0.5
866,044 + CCNA_00800 0.78 +0.1
866,090 - CCNA_00800 0.81 -0.4
866,119 + CCNA_00800 0.83 -1.6
866,124 + CCNA_00800 0.83 +0.5
866,183 - CCNA_00800 0.87 -0.0
866,193 - CCNA_00800 0.87 +1.0
866,265 - -1.0
866,266 + -0.0
866,268 + +0.7
866,283 + -0.7
866,291 - +0.5
866,308 - -0.4
866,337 - -1.7
866,343 - -1.1
866,352 + +0.2
866,386 + +0.5
866,386 + +0.3
866,386 + +0.8
866,386 + +0.9
866,386 + +1.2
866,386 + +0.5
866,386 + +1.5
866,386 + -1.4
866,386 + +1.0
866,394 - +0.9
866,394 - +1.4
866,394 - +0.6
866,394 - +0.8
866,394 - -0.7
866,394 - +0.9
866,394 - +0.8
866,446 + +0.5
866,484 - -0.7
866,517 + -1.2
866,525 - CCNA_00801 0.10 -0.0
866,540 - CCNA_00801 0.12 -0.4
866,592 + CCNA_00801 0.16 -0.2
866,602 + CCNA_00801 0.17 +0.7
866,602 + CCNA_00801 0.17 +0.5
866,610 - CCNA_00801 0.18 +0.1
866,634 + CCNA_00801 0.20 -1.6
866,645 + CCNA_00801 0.21 +0.5
866,653 - CCNA_00801 0.21 -0.4
866,755 - CCNA_00801 0.30 -1.0
866,818 + CCNA_00801 0.36 -0.2
866,818 + +1.7
866,818 - CCNA_00801 0.36 +0.8
866,823 + CCNA_00801 0.36 -0.0
866,823 + CCNA_00801 0.36 +0.5
866,823 + CCNA_00801 0.36 -0.0
866,823 + CCNA_00801 0.36 -1.8
866,823 + CCNA_00801 0.36 -0.6
866,823 + CCNA_00801 0.36 -1.0
866,828 + CCNA_00801 0.37 +1.0
866,831 - CCNA_00801 0.37 +0.2
866,831 - CCNA_00801 0.37 +0.5
866,831 - CCNA_00801 0.37 -1.0
866,831 - CCNA_00801 0.37 +0.3
866,831 - CCNA_00801 0.37 +0.5
866,835 + CCNA_00801 0.37 +0.3
866,880 + CCNA_00801 0.41 -0.7
866,909 - CCNA_00801 0.44 -0.4
866,927 + CCNA_00801 0.45 +1.7
866,970 + CCNA_00801 0.49 -1.1
866,970 + CCNA_00801 0.49 +1.0
866,970 + CCNA_00801 0.49 -0.7
866,978 - CCNA_00801 0.50 -2.0
866,978 - CCNA_00801 0.50 +0.3
866,978 - CCNA_00801 0.50 -0.6
866,987 + CCNA_00801 0.50 +0.7
866,993 + CCNA_00801 0.51 +1.0
866,995 - CCNA_00801 0.51 -1.0
867,039 + CCNA_00801 0.55 -0.4
867,047 - CCNA_00801 0.56 -0.0
867,047 - CCNA_00801 0.56 +1.7
867,057 - CCNA_00801 0.57 -0.9
867,081 - CCNA_00801 0.59 -0.2
867,119 + CCNA_00801 0.62 -1.0
867,122 - CCNA_00801 0.62 -1.0
867,122 - CCNA_00801 0.62 -1.1
867,228 + CCNA_00801 0.71 -1.9
867,236 - CCNA_00801 0.72 -0.2
867,257 - CCNA_00801 0.74 -1.4
867,259 + CCNA_00801 0.74 -0.6
867,259 + CCNA_00801 0.74 -0.0
867,267 - CCNA_00801 0.75 +1.0
867,334 + CCNA_00801 0.81 -0.3
867,363 + CCNA_00801 0.83 -1.7
867,381 - CCNA_00801 0.85 -0.7
867,381 - CCNA_00801 0.85 -0.5
867,381 - CCNA_00801 0.85 -1.1

Or see this region's nucleotide sequence